PlantPromoterDB promoter information of ATCG00770
Summary of Gene (ATCG00770)
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Overview
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Focused view (chromosome C: 81472-80273)
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Genome position
from initiation codon ATCG00780.1 ATCG00790.1 TSS from cDNA TSS information ATCG00770 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of ATCG00770
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | - | 81153 | -681 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 81001 | -529 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | AATATATAATG | - | 81177 | 81187 | -705 | -715 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAACGCGT | - | 81351 | 81358 | -879 | -886 | |||
| AtREG633 | AAACGCGT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | CGACGTGG | - | 81415 | 81422 | -943 | -950 | |||
| AtREG465 | CGACGTGG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| REG | ATGACACG | - | 81430 | 81437 | -958 | -965 | |||
| AtREG438 | ATGACACG | ABA | PPDB Motif | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGGTTCGG | - | 80398 | 80405 | ATCG00750.1, ATCG00760.1 | ||||
| AtREG456 | CGGTTCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||