Summary of Gene (ATCG00770)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon ATCG00780.1 ATCG00790.1 TSS from cDNA TSS information ATCG00770 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | - | 81153 | -681 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 81001 | -529 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | AATATATAATG | - | 81177 | 81187 | -705 | -715 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAACGCGT | - | 81351 | 81358 | -879 | -886 | |||
AtREG633 | AAACGCGT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | CGACGTGG | - | 81415 | 81422 | -943 | -950 | |||
AtREG465 | CGACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
REG | ATGACACG | - | 81430 | 81437 | -958 | -965 | |||
AtREG438 | ATGACACG | ABA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CGGTTCGG | - | 80398 | 80405 | ATCG00750.1, ATCG00760.1 | ||||
AtREG456 | CGGTTCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |