PlantPromoterDB promoter information of 003-012-B10

Summary of Gene (003-012-B10)

Organism	Oryza sativa
Chromosome	4
Locus	Os04g0687900 NCBI
Gene model	003-012-B10
Description	NONE

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Overview

Focused view (chromosome 4: 35575643-35576842)

`Genome position from initiation codon` 009-068-D03 015-097-H12 AK062547 AK066910 AK098928 AK104333 J013023N16 J013031I07 J013063L06 J013091C11 J013123M06 J013126D14 J023023E09 J023039C19 J023068D23 J023080C21 J033092J17 J033112P12 J033135O08 J053023C13 J065030O05 J065065P07 J065190O06 J090011M19 J090061F08 J090064H09 J090064P11 TSS from cDNA TSS information 003-012-B10 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of 003-012-B10

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone + 35576013 AK098928, 015-097-H12, J023023E09, J023080C21, J090011M19, J090061F08, AK066910, J013091C11, J023068D23, J013031I07, J013123M06, AK098928, J033112P12, J013063L06, J013023N16, J065030O05, J065065P07, J065190O06, J090064P11, J013126D14, 009-068-D03, AK062547, AK104333, J033092J17, J090064H09, J023039C19, J033135O08, J053023C13

TSS clone C clone + 35576014 AK098928, 015-097-H12, J023023E09, J023080C21, J090011M19, J090061F08, AK066910, J013091C11, J023068D23, J013031I07, J013123M06, AK098928, J033112P12, J013063L06, J013023N16, J065030O05, J065065P07, J065190O06, J090064P11, J013126D14, 009-068-D03, AK062547, AK104333, J033092J17, J090064H09, J023039C19, J033135O08, J053023C13

TSS clone peak A clone + 35576019 AK098928, 015-097-H12, J023023E09, J023080C21, J090011M19, J090061F08, AK066910, J013091C11, J023068D23, J013031I07, J013123M06, AK098928, J033112P12, J013063L06, J013023N16, J065030O05, J065065P07, J065190O06, J090064P11, J013126D14, 009-068-D03, AK062547, AK104333, J033092J17, J090064H09, J023039C19, J033135O08, J053023C13

TSS clone G clone + 35576050 AK098928, 015-097-H12, J023023E09, J023080C21, J090011M19, J090061F08, AK066910, J013091C11, J023068D23, J013031I07, J013123M06, AK098928, J033112P12, J013063L06, J013023N16, J065030O05, J065065P07, J065190O06, J090064P11, J013126D14, 009-068-D03, AK062547, AK104333, J033092J17, J090064H09, J023039C19, J033135O08, J053023C13

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	+	35576013	AK098928, 015-097-H12, J023023E09, J023080C21, J090011M19, J090061F08, AK066910, J013091C11, J023068D23, J013031I07, J013123M06, AK098928, J033112P12, J013063L06, J013023N16, J065030O05, J065065P07, J065190O06, J090064P11, J013126D14, 009-068-D03, AK062547, AK104333, J033092J17, J090064H09, J023039C19, J033135O08, J053023C13
TSS clone	`C`	clone	+	35576014	AK098928, 015-097-H12, J023023E09, J023080C21, J090011M19, J090061F08, AK066910, J013091C11, J023068D23, J013031I07, J013123M06, AK098928, J033112P12, J013063L06, J013023N16, J065030O05, J065065P07, J065190O06, J090064P11, J013126D14, 009-068-D03, AK062547, AK104333, J033092J17, J090064H09, J023039C19, J033135O08, J053023C13
TSS clone peak	`A`	clone	+	35576019	AK098928, 015-097-H12, J023023E09, J023080C21, J090011M19, J090061F08, AK066910, J013091C11, J023068D23, J013031I07, J013123M06, AK098928, J033112P12, J013063L06, J013023N16, J065030O05, J065065P07, J065190O06, J090064P11, J013126D14, 009-068-D03, AK062547, AK104333, J033092J17, J090064H09, J023039C19, J033135O08, J053023C13
TSS clone	`G`	clone	+	35576050	AK098928, 015-097-H12, J023023E09, J023080C21, J090011M19, J090061F08, AK066910, J013091C11, J023068D23, J013031I07, J013123M06, AK098928, J033112P12, J013063L06, J013023N16, J065030O05, J065065P07, J065190O06, J090064P11, J013126D14, 009-068-D03, AK062547, AK104333, J033092J17, J090064H09, J023039C19, J033135O08, J053023C13

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TATAAAAG + 35575978 35575985 009-068-D03, 015-097-H12, AK062547, AK066910, AK098928, AK104333, J013023N16, J013031I07, J013063L06, J013091C11, J013123M06, J013126D14, J023023E09, J023039C19, J023068D23, J023080C21, J033092J17, J033112P12, J033135O08, J053023C13, J065030O05, J065065P07, J065190O06, J090011M19, J090061F08, J090064H09, J090064P11

Y Patch TCTCCCCC + 35576002 35576009 009-068-D03, 015-097-H12, AK062547, AK066910, AK098928, AK104333, J013023N16, J013031I07, J013063L06, J013091C11, J013123M06, J013126D14, J023023E09, J023039C19, J023068D23, J023080C21, J033092J17, J033112P12, J033135O08, J053023C13, J065030O05, J065065P07, J065190O06, J090011M19, J090061F08, J090064H09, J090064P11

Y Patch TCTCCTCC + 35576042 35576049 009-068-D03, 015-097-H12, AK062547, AK066910, AK098928, AK104333, J013023N16, J013031I07, J013063L06, J013091C11, J013123M06, J013126D14, J023023E09, J023039C19, J023068D23, J023080C21, J033092J17, J033112P12, J033135O08, J053023C13, J065030O05, J065065P07, J065190O06, J090011M19, J090061F08, J090064H09, J090064P11

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TATAAAAG`	+	35575978	35575985	009-068-D03, 015-097-H12, AK062547, AK066910, AK098928, AK104333, J013023N16, J013031I07, J013063L06, J013091C11, J013123M06, J013126D14, J023023E09, J023039C19, J023068D23, J023080C21, J033092J17, J033112P12, J033135O08, J053023C13, J065030O05, J065065P07, J065190O06, J090011M19, J090061F08, J090064H09, J090064P11
Y Patch	`TCTCCCCC`	+	35576002	35576009	009-068-D03, 015-097-H12, AK062547, AK066910, AK098928, AK104333, J013023N16, J013031I07, J013063L06, J013091C11, J013123M06, J013126D14, J023023E09, J023039C19, J023068D23, J023080C21, J033092J17, J033112P12, J033135O08, J053023C13, J065030O05, J065065P07, J065190O06, J090011M19, J090061F08, J090064H09, J090064P11
Y Patch	`TCTCCTCC`	+	35576042	35576049	009-068-D03, 015-097-H12, AK062547, AK066910, AK098928, AK104333, J013023N16, J013031I07, J013063L06, J013091C11, J013123M06, J013126D14, J023023E09, J023039C19, J023068D23, J023080C21, J033092J17, J033112P12, J033135O08, J053023C13, J065030O05, J065065P07, J065190O06, J090011M19, J090061F08, J090064H09, J090064P11
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CCACTGACACGTGGG + 35575905 35575919 009-068-D03, 015-097-H12, AK062547, AK066910, AK098928, AK104333, J013023N16, J013031I07, J013063L06, J013091C11, J013123M06, J013126D14, J023023E09, J023039C19, J023068D23, J023080C21, J033092J17, J033112P12, J033135O08, J053023C13, J065030O05, J065065P07, J065190O06, J090011M19, J090061F08, J090064H09, J090064P11

OsREG522 CCACTGAC        PPDB Motif PLACE Motif TGAC

OsREG510 CACTGACA       PPDB Motif PLACE Motif TGAC

OsREG509      GACACGTG   PPDB Motif ACGT PLACE Motif ACGTGKC

OsREG434       ACACGTGG PPDB Motif ACGT PLACE Motif

OsREG508        CACGTGGG PPDB Motif ACGT PLACE Motif

REG AATGGGCT + 35575945 35575952 009-068-D03, 015-097-H12, AK062547, AK066910, AK098928, AK104333, J013023N16, J013031I07, J013063L06, J013091C11, J013123M06, J013126D14, J023023E09, J023039C19, J023068D23, J023080C21, J033092J17, J033112P12, J033135O08, J053023C13, J065030O05, J065065P07, J065190O06, J090011M19, J090061F08, J090064H09, J090064P11

OsREG432 AATGGGCT PPDB Motif GCCCA PLACE Motif