Summary of Gene (006-024-C10)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 006-022-B11 006-022-D10 006-022-E02 006-022-F03 006-023-C11 006-024-C12 006-024-G12 006-026-C04 006-026-E05 006-026-E11 006-026-F09 006-026-H05 006-027-D03 006-028-C04 006-029-G10 006-030-A11 006-030-D12 006-031-G05 006-032-H06 006-033-A02 006-033-A06 006-034-B10 006-034-F07 006-035-A08 006-035-F07 006-036-A04 006-036-B04 006-037-D02 006-037-F12 006-037-H12 006-040-G12 006-040-H03 006-040-H06 006-042-B12 006-042-H10 006-044-G09 006-045-C04 006-046-B10 006-047-A05 006-048-D05 006-049-A08 006-050-C07 006-050-H10 006-051-G03 006-052-A01 006-052-A05 006-052-B03 006-052-D10 006-054-D03 006-055-A12 006-055-C05 006-055-F05 006-055-H10 006-056-A02 006-056-D07 006-057-A03 006-057-B06 006-057-H08 006-058-C04 006-058-F06 006-059-C10 006-059-G08 006-060-E10 006-061-B10 006-062-A05 006-062-B04 006-063-A04 006-063-D01 006-063-G12 006-064-D12 006-066-A03 006-066-C03 006-067-A03 006-067-G07 006-068-A06 006-069-D04 006-069-G05 006-070-H08 006-071-A05 006-071-H11 006-072-A07 006-072-B02 006-072-D11 006-072-H12 006-075-G06 006-077-B09 006-078-D01 006-078-D02 006-078-E05 006-078-G07 006-079-C03 006-079-F12 006-079-H01 006-080-D04 006-080-H04 006-081-A10 006-082-G02 006-082-H07 006-083-B03 006-085-A09 006-085-A12 006-085-F07 006-086-B11 006-086-D01 006-086-G04 006-087-E04 006-087-G09 006-088-E11 006-088-G10 006-088-H01 006-089-B04 006-089-D05 006-089-F07 006-089-H07 006-090-B06 006-090-H05 006-091-E11 006-092-H01 006-093-B08 006-093-C07 006-093-F02 006-093-G05 006-093-G06 006-094-D10 006-094-H07 006-095-G03 006-096-A06 006-096-E03 006-097-B03 006-097-D03 006-098-B07 006-098-G05 006-099-F05 006-100-H10 006-100-H12 006-101-A06 006-101-A08 006-101-A12 006-101-D04 006-101-G07 006-102-B12 006-102-E09 006-102-F02 006-103-D09 006-105-D05 006-105-D08 006-106-C07 006-106-F12 006-107-D01 006-109-C05 006-109-C08 006-109-D02 006-111-F03 006-112-C12 006-112-D08 006-113-A01 006-113-B03 006-113-C11 006-113-E07 006-113-F08 006-114-D08 006-114-H08 006-115-A08 006-115-A09 006-115-G05 006-117-B06 006-117-B09 006-117-F11 006-117-G10 006-117-H08 006-118-C06 006-118-G11 006-119-H03 006-120-D01 006-120-D12 006-120-H04 009-022-E12 009-044-H02 009-074-B08 009-145-B08 009-156-D09 009-163-F03 009-193-G03 AF010321 AK060987 AK070051 AK103966 AK104016 AK104127 AK104177 AK104283 AK104608 AK104651 AK119176 J065013J05 J065129D23 J065138E06 J065179N22 J065192A07 J065208G16 J075013K01 J075017B12 J075018O17 J075023H05 J075053L02 J075067I01 J075083D19 J075083G03 J075084F12 J075088K18 J075094A18 J075094I22 J075097E17 J075098I24 J075110K19 J075118G21 J075118J20 J075120G14 J075120H20 J075127H23 J075139M03 J075142E17 J075149N17 J075152A20 J075157N22 J075159K21 J075173B20 J075192N20 J075196A07 J075199N04 J080005P10 J080025I24 J080064D09 J080064N24 J080068B02 J080097K04 J080097K19 J080097N20 J100055P07 TSS from cDNA TSS information 006-024-C10 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | + | 24017935 | -47 |
TSS clone peak | C | clone | + | 24017946 | -36 |
TSS clone | G | clone | + | 24017949 | -33 |
TSS clone | A | clone | + | 24017950 | -32 |
TSS clone | A | clone | + | 24017953 | -29 |
TSS clone | C | clone | + | 24017955 | -27 |
TSS clone | A | clone | + | 24017956 | -26 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCTCGCCC | + | 24017741 | 24017748 | -241 | -234 | |||
OsREG549 | CCTCGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGGGCCCCACC | + | 24017759 | 24017769 | -223 | -213 | |||
OsREG567 | CGGGCCCC | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG612 | GCCCCACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGCCACGTC | + | 24017785 | 24017793 | -197 | -189 | |||
OsREG448 | CGCCACGT | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG585 | GCCACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | CGCGACGCG | + | 24017838 | 24017846 | -144 | -136 | |||
OsREG556 | CGCGACGC | PPDB Motif |   | PLACE Motif | CGACG  | ||||
OsREG559 | GCGACGCG | PPDB Motif |   | PLACE Motif | CGACG  | ||||
REG | GCCCATCC | + | 24017878 | 24017885 | -104 | -97 | |||
OsREG608 | GCCCATCC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |