PlantPromoterDB promoter information of 006-029-D12
Summary of Gene (006-029-D12)
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Overview
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Focused view (chromosome 12: 10081342-10080143)
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Genome position
from initiation codon 006-028-B09 006-034-G05 006-036-A02 006-039-A08 006-057-H10 006-064-D08 006-064-G03 006-071-B05 006-089-D01 006-095-G02 006-098-H02 006-109-H01 006-115-H09 006-120-B02 009-005-E08 009-027-E04 009-028-A10 009-050-G03 009-070-E05 009-095-D10 009-103-A05 009-113-G09 009-116-E08 009-125-F02 009-125-F09 009-129-F03 009-130-F01 009-140-F07 009-151-F07 009-153-D04 009-165-D08 009-170-E11 009-171-C01 009-171-G05 009-189-F07 009-193-H05 009-194-D08 AF017364 AF052305 AK061611 AK119219 AK121444 D00643 J013031F15 J013037P20 J013050D13 J013056J24 J013071M01 J013074G12 J013120E19 J013124M17 J013127I18 J013129G13 J013132L16 J013146M05 J023044F05 J023056E16 J023141B14 J065008E12 J065010I24 J065013B01 J065019L16 J065021E19 J065027G11 J065039B19 J065039K03 J065044I07 J065047B10 J065050A16 J065050B15 J065052H09 J065053K05 J065061H12 J065061M13 J065078M16 J065083L13 J065084L01 J065091O21 J065095D06 J065095J12 J065097I18 J065114N19 J065118P09 J065123D11 J065123F08 J065124B04 J065128C04 J065137J07 J065165K23 J065183D22 J065195B17 J065201N18 J065204K15 J065208F08 J075011P21 J075020D18 J075028H08 J075065H14 J075069O11 J075071P10 J075177C11 J080002E12 J080002F23 J080002J09 J080003L11 J080004C05 J080004E12 J080004L13 J080006E06 J080006H14 J080008B07 J080008C21 J080008G01 J080008I09 J080008J10 J080008O08 J080009C10 J080009M22 J080009O11 J080009P22 J080010B11 J080010K04 J080011F13 J080013K07 J080014H24 J080015A13 J080015G11 J080015N21 J080016N04 J080018I15 J080018O22 J080020N07 J080021F19 J080021K02 J080023E20 J080025M08 J080026E10 J080027M18 J080029C04 J080030A07 J080030A13 J080030D14 J080030D18 J080031H14 J080031N07 J080032B12 J080036N19 J080036O03 J080038J23 J080040D10 J080040E08 J080041K04 J080042F24 J080042H22 J080042H23 J080044N24 J080045F16 J080046C04 J080046C19 J080046L07 J080046M19 J080048N16 J080048P05 J080049N15 J080050G22 J080052A09 J080052J01 J080053N04 J080055K09 J080056N06 J080057G09 J080058E22 J080059E04 J080061F19 J080062C19 J080062E15 J080063M12 J080063P12 J080064F02 J080064O16 J080065E22 J080066C18 J080068E10 J080068O13 J080069A09 J080069M24 J080071B21 J080071C23 J080072H01 J080072I16 J080074D12 J080075F18 J080075J08 J080075N24 J080076L02 J080076L21 J080077E23 J080079M18 J080080B19 J080080H19 J080080L11 J080081L18 J080082N16 J080083M19 J080084C20 J080084M05 J080085O19 J080086E02 J080087B17 J080088G21 J080088M20 J080089H02 J080090F01 J080090O03 J080091F10 J080091F21 J080091G07 J080091H02 J080092C01 J080092C08 J080092H03 J080092L08 J080094F04 J080094H13 J080095B19 J080096G21 J080096M14 J080097M21 J080308I23 J080319A21 J090009G07 J090015E19 L22155 TSS from cDNA TSS information 006-029-D12 5'->3' (-) Promoter sequence Os12g0275000 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of 006-029-D12
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 10080501 | -309 |
| TSS clone peak | A | clone | - | 10080498 | -306 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGATCCG | - | 10080546 | 10080553 | -354 | -361 | |||
| OsREG541 | CCGATCCG | PPDB Motif | PLACE Motif | ||||||
| REG | CCACGGCC | - | 10080685 | 10080692 | -493 | -500 | |||
| OsREG521 | CCACGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCATCA | - | 10080766 | 10080773 | -574 | -581 | |||
| OsREG607 | GCCCATCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ACCCGCGC | - | 10080775 | 10080782 | -583 | -590 | |||
| OsREG439 | ACCCGCGC | PPDB Motif | PLACE Motif | ||||||
| REG | CCCATCCA | - | 10080788 | 10080795 | -596 | -603 | |||
| OsREG534 | CCCATCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||