Summary of Gene (006-032-A07)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 006-042-C10 006-066-C01 006-070-B11 006-090-E12 006-096-H07 006-119-A02 009-195-G10 009-198-B12 AK060054 AK068231 AK098879 AK104639 J013001F11 J013123K05 J013147O19 J013151M18 TSS from cDNA TSS information 006-032-A07 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 18502823 | -512 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GGTATAAA | - | 18502852 | 18502859 | -541 | -548 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCCATAA | - | 18502886 | 18502893 | -575 | -582 | |||
OsREG605 | GCCCATAA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | - | 18501941 | AK068231, AK068231, J013147O19 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GTCGCGTC | - | 18501994 | 18502001 | AK068231, J013147O19 | ||||
OsREG583 | GTCGCGTC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGGACGGC | - | 18502142 | 18502149 | AK068231, J013147O19 | ||||
OsREG562 | CGGACGGC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGCGACGCG | - | 18502216 | 18502224 | AK068231, J013147O19 | ||||
OsREG556 | CGCGACGC | PPDB Motif |   | PLACE Motif | CGACG  | ||||
OsREG559 | GCGACGCG | PPDB Motif |   | PLACE Motif | CGACG  | ||||
REG | CCCGTGGG | - | 18502227 | 18502234 | AK068231, J013147O19 | ||||
OsREG531 | CCCGTGGG | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   |