PlantPromoterDB promoter information of 006-032-A07
Summary of Gene (006-032-A07)
|
Overview
|
Focused view (chromosome 5: 18502561-18501362)
|
Genome position
from initiation codon 006-042-C10 006-066-C01 006-070-B11 006-090-E12 006-096-H07 006-119-A02 009-195-G10 009-198-B12 AK060054 AK068231 AK098879 AK104639 J013001F11 J013123K05 J013147O19 J013151M18 TSS from cDNA TSS information 006-032-A07 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
|
|
|
Promoter Summary of 006-032-A07
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 18502823 | -512 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GGTATAAA | - | 18502852 | 18502859 | -541 | -548 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCATAA | - | 18502886 | 18502893 | -575 | -582 | |||
| OsREG605 | GCCCATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | G | clone | - | 18501941 | AK068231, AK068231, J013147O19 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GTCGCGTC | - | 18501994 | 18502001 | AK068231, J013147O19 | ||||
| OsREG583 | GTCGCGTC | PPDB Motif | PLACE Motif | ||||||
| REG | CGGACGGC | - | 18502142 | 18502149 | AK068231, J013147O19 | ||||
| OsREG562 | CGGACGGC | PPDB Motif | PLACE Motif | ||||||
| REG | CGCGACGCG | - | 18502216 | 18502224 | AK068231, J013147O19 | ||||
| OsREG556 | CGCGACGC | PPDB Motif | PLACE Motif | CGACG | |||||
| OsREG559 | GCGACGCG | PPDB Motif | PLACE Motif | CGACG | |||||
| REG | CCCGTGGG | - | 18502227 | 18502234 | AK068231, J013147O19 | ||||
| OsREG531 | CCCGTGGG | PPDB Motif | GCCCA, ACGGGC | PLACE Motif | |||||