Summary of Gene (006-033-E02)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information 006-033-E02 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 36925742 | -70 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCTCAGCT | + | 36925502 | 36925509 | -310 | -303 | |||
OsREG470 | GCTCAGCT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TAATGGGCTTT | + | 36925572 | 36925582 | -240 | -230 | |||
OsREG610 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG432 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG429 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG421 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCTGGGCCGTA | + | 36925616 | 36925626 | -196 | -186 | |||
OsREG629 | TCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG645 | GGGCCGTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTGGCCCATGG | + | 36925630 | 36925640 | -182 | -172 | |||
OsREG653 | GTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG525 | GCCCATGG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
REG | GGGCGAGG | + | 36925668 | 36925675 | -144 | -137 | |||
OsREG549 | GGGCGAGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTTGGTGG | + | 36925680 | 36925687 | -132 | -125 | |||
OsREG520 | GTTGGTGG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | GGTGGATGGG | + | 36925689 | 36925698 | -123 | -114 | |||
OsREG515 | GGTGGATG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG534 | TGGATGGG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |