Summary of Gene (006-047-A09)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 004-013-E07 006-021-D03 006-021-D07 006-021-F09 006-023-D01 006-024-F04 006-024-G09 006-024-G11 006-025-A10 006-025-B08 006-025-E10 006-025-F10 006-026-B04 006-026-C08 006-026-D03 006-026-F03 006-026-F08 006-026-F12 006-027-A10 006-027-C03 006-028-C03 006-029-E02 006-029-G05 006-030-A10 006-030-C06 006-030-D03 006-030-D06 006-030-G05 006-031-B10 006-031-D04 006-031-D11 006-031-H09 006-032-C09 006-032-H09 006-033-B02 006-033-B09 006-033-E01 006-033-F06 006-033-G03 006-034-A08 006-034-C09 006-034-F06 006-035-B12 006-035-C12 006-035-H04 006-035-H12 006-036-A05 006-036-A09 006-036-B10 006-036-C03 006-036-E06 006-037-H11 006-038-G01 006-039-B01 006-039-B12 006-039-C02 006-039-E06 006-039-G12 006-040-G07 006-041-H04 006-042-A11 006-042-E07 006-042-F12 006-043-C01 006-045-H12 006-046-A12 006-046-F03 006-047-A07 006-047-E10 006-047-G12 006-048-B04 006-049-D01 006-049-G02 006-049-G10 006-049-H04 006-050-D05 006-050-F05 006-051-B05 006-051-G12 006-052-D12 006-053-D06 006-054-H02 006-055-A03 006-055-C01 006-055-E07 006-055-H06 006-056-F06 006-057-D03 006-057-D05 006-057-G01 006-058-A03 006-058-B06 006-059-A09 006-059-H11 006-060-A04 006-060-A09 006-060-C11 006-060-D08 006-061-A04 006-061-E01 006-061-G10 006-061-H12 006-062-B07 006-062-G03 006-062-H12 006-063-D05 006-063-E04 006-063-F05 006-063-G05 006-064-B07 006-065-C11 006-065-H02 006-067-C12 006-067-F10 006-068-E02 006-068-G04 006-069-A02 006-071-A07 006-072-F11 006-072-F12 006-073-E12 006-073-F08 006-073-H07 006-074-A07 006-075-A12 006-075-B01 006-075-H10 006-075-H12 006-076-B06 006-077-A09 006-077-D05 006-078-C11 006-078-D12 006-078-E02 006-079-A01 006-079-E02 006-079-F03 006-080-G11 006-081-C02 006-081-C08 006-082-B06 006-082-C11 006-082-H04 006-083-E04 006-083-H12 006-084-C08 006-084-E07 006-084-E10 006-085-E06 006-085-E10 006-086-F06 006-087-D08 006-087-F03 006-087-F10 006-087-G07 006-088-A02 006-089-A04 006-089-B12 006-089-D06 006-089-D10 006-089-H05 006-090-C06 006-091-A03 006-091-E04 006-091-H12 006-092-A08 006-092-F01 006-092-G08 006-093-B12 006-093-D04 006-093-F01 006-094-A08 006-094-F01 006-094-F03 006-095-C12 006-095-E10 006-095-E12 006-095-G06 006-096-B12 006-096-C12 006-096-G02 006-097-D01 006-097-D07 006-097-F04 006-098-C07 006-098-D04 006-099-E06 006-099-F02 006-099-F10 006-100-A07 006-100-B10 006-100-G01 006-100-H06 006-101-D01 006-101-F03 006-102-A12 006-102-B11 006-102-C03 006-102-F11 006-103-A08 006-103-B06 006-103-D01 006-103-F02 006-104-B02 006-104-C01 006-104-F09 006-104-H11 006-105-A03 006-105-D09 006-106-B10 006-107-A06 006-107-C04 006-107-E03 006-107-F05 006-108-C09 006-109-C09 006-109-D10 006-109-E06 006-109-E10 006-110-A06 006-110-C11 006-111-A02 006-111-F02 006-112-A08 006-112-H06 006-113-A08 006-113-B01 006-113-C05 006-113-D01 006-113-D04 006-113-D06 006-113-E09 006-114-F06 006-116-B02 006-117-B07 006-117-G04 006-118-D01 006-118-D12 006-118-F12 006-118-G12 006-119-B08 006-120-E09 006-120-G05 006-120-G10 009-022-D12 009-051-H08 009-065-F05 009-070-A06 009-073-B07 009-092-C10 009-093-D03 009-103-B04 009-106-H08 009-120-B05 009-121-F05 009-122-B04 009-122-D08 009-123-F07 009-125-G02 009-128-F02 009-128-H07 009-131-C06 009-132-F08 009-133-G08 009-134-D09 009-135-F01 009-149-E11 009-153-H04 009-161-E04 009-163-A09 009-163-C05 009-163-E10 009-165-F04 009-166-A07 009-169-G12 009-172-G08 009-179-E06 009-181-F09 009-190-G07 009-191-D01 009-195-G02 AF022738 AK061512 AK068972 AK103926 AK103999 AK104224 AK104465 AK104495 AK109399 AK119533 AK119545 J013043L10 J013050A09 J023001G03 J023024D14 J023072E11 J023149E18 J033029B16 J065001O21 J065035B04 J065044D18 J065057F12 J065060A11 J065062G15 J065080F13 J065084N12 J065101D02 J065107C07 J065112N24 J065141I16 J065147D05 J065167H02 J065207K23 J075008E16 J075014F03 J075015O17 J075020H20 J075021E22 J075023N13 J075028H10 J075040F20 J075051L23 J075069G16 J075084F24 J075090H09 J075092M21 J075110C10 J075111J12 J075114L04 J075139E02 J075160M10 J075176J03 J075183I17 J075191N10 J075193D07 J075194M16 J075197K04 J080032I11 J080076M11 J080311J08 J080317E05 J090034L08 J100040D19 J100074C11 TSS from cDNA TSS information 006-047-A09 5'->3' (+) Promoter sequence AK068466
AK104858 AK120271 AY374513 AY374514 J013047M22 J013050C16 J013071C23 J013126F22 J013155K02 J013170J03 J033031C06 J033067N11 J033098C14 J033110O21 J065204B11 J090006M07 J090034G13 J090039H15 J090068M19 J090076F24 J090077N06 J090097E03 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 23147623 | -34 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCCCTT | + | 23147583 | 23147591 | -74 | -66 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTGGGTCCCA | + | 23147377 | 23147386 | -280 | -271 | |||
OsREG622 | GTGGGTCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG637 | TGGGTCCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG648 | GGGTCCCA | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | GCCCGGCCCAAAA | + | 23147398 | 23147410 | -259 | -247 | |||
OsREG614 | GCCCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG592 | GCCCAAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCTGGGCCGAAA | + | 23147417 | 23147428 | -240 | -229 | |||
OsREG620 | GCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG642 | GGGCCGAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG634 | GGCCGAAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATCCGACGTGGC | + | 23147457 | 23147468 | -200 | -189 | |||
OsREG483 | ATCCGACG | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
OsREG585 | GACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | GCCCAAAT | + | 23147505 | 23147512 | -152 | -145 | |||
OsREG493 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |