PlantPromoterDB promoter information of 006-051-C05
Summary of Gene (006-051-C05)
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Overview
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Focused view (chromosome 3: 9070298-9071497)
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Genome position
from initiation codon TSS from cDNA TSS information 006-051-C05 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 006-051-C05
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 9073256 | -192 |
| TSS clone peak | A | clone | + | 9073268 | -180 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACACGTGG | + | 9073005 | 9073012 | -443 | -436 | |||
| OsREG434 | ACACGTGG | PPDB Motif | ACGT | PLACE Motif | |||||
| REG | ACCCGCGC | + | 9073068 | 9073075 | -380 | -373 | |||
| OsREG439 | ACCCGCGC | PPDB Motif | PLACE Motif | ||||||
| REG | ATTGGGCCGA | + | 9073109 | 9073118 | -339 | -330 | |||
| OsREG492 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG658 | TGGGCCGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGTGTGTG | + | 9073140 | 9073147 | -308 | -301 | |||
| OsREG499 | GGTGTGTG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||