PlantPromoterDB promoter information of 006-056-A06
Summary of Gene (006-056-A06)
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Overview
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Focused view (chromosome 8: 21492214-21491015)
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Genome position
from initiation codon AK102539 J023073L20 J033096J21 J065012O03 J065058M10 J065087A03 J065190M24 J065208K04 J100048C11 J100084D20 TSS from cDNA TSS information 006-056-A06 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of 006-056-A06
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 21491385 | -171 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCTCCCCTCT | - | 21491352 | 21491362 | -138 | -148 |
| Y Patch | CCCCTCCC | - | 21491369 | 21491376 | -155 | -162 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCTCGGCCCAGTT | - | 21491449 | 21491461 | -235 | -247 | |||
| OsREG635 | TCTCGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG575 | CTCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG658 | TCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG565 | CGGCCCAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG454 | GGCCCAGT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG425 | GCCCAGTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGGCTCGG | - | 21491487 | 21491494 | -273 | -280 | |||
| OsREG540 | CGGCTCGG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||