Summary of Gene (006-057-B06)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information 006-057-B06 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | + | 24017935 | -47 |
TSS clone peak | C | clone | + | 24017946 | -36 |
TSS clone | G | clone | + | 24017949 | -33 |
TSS clone | A | clone | + | 24017950 | -32 |
TSS clone | A | clone | + | 24017953 | -29 |
TSS clone | C | clone | + | 24017955 | -27 |
TSS clone | A | clone | + | 24017956 | -26 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCTCGCCC | + | 24017741 | 24017748 | -241 | -234 | |||
OsREG549 | CCTCGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGGGCCCCACC | + | 24017759 | 24017769 | -223 | -213 | |||
OsREG567 | CGGGCCCC | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG612 | GCCCCACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGCCACGTC | + | 24017785 | 24017793 | -197 | -189 | |||
OsREG448 | CGCCACGT | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG585 | GCCACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | CGCGACGCG | + | 24017838 | 24017846 | -144 | -136 | |||
OsREG556 | CGCGACGC | PPDB Motif |   | PLACE Motif | CGACG  | ||||
OsREG559 | GCGACGCG | PPDB Motif |   | PLACE Motif | CGACG  | ||||
REG | GCCCATCC | + | 24017878 | 24017885 | -104 | -97 | |||
OsREG608 | GCCCATCC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |