Summary of Gene (006-068-G04)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon Os07g0562601 TSS from cDNA TSS information 006-068-G04 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 23147623 | -34 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCCCTT | + | 23147583 | 23147591 | -74 | -66 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTGGGTCCCA | + | 23147377 | 23147386 | -280 | -271 | |||
OsREG622 | GTGGGTCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG637 | TGGGTCCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG648 | GGGTCCCA | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | GCCCGGCCCAAAA | + | 23147398 | 23147410 | -259 | -247 | |||
OsREG614 | GCCCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG592 | GCCCAAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCTGGGCCGAAA | + | 23147417 | 23147428 | -240 | -229 | |||
OsREG620 | GCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG642 | GGGCCGAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG634 | GGCCGAAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATCCGACGTGGC | + | 23147457 | 23147468 | -200 | -189 | |||
OsREG483 | ATCCGACG | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
OsREG585 | GACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | GCCCAAAT | + | 23147505 | 23147512 | -152 | -145 | |||
OsREG493 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |