PlantPromoterDB promoter information of 006-070-D05
Summary of Gene (006-070-D05)
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Overview
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Focused view (chromosome 1: 19007168-19008367)
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Genome position
from initiation codon 006-021-E12 006-022-B08 006-022-C09 006-022-C12 006-022-F10 006-023-A09 006-023-D02 006-023-E06 006-023-E11 006-025-A01 006-025-B07 006-025-F04 006-025-F11 006-027-F05 006-028-C02 006-029-B01 006-029-D09 006-029-G02 006-029-H08 006-030-A02 006-030-B05 006-031-A01 006-032-E09 006-032-G10 006-032-H11 006-033-B08 006-033-E11 006-034-H01 006-035-B09 006-035-D08 006-036-F01 006-036-G01 006-037-E12 006-039-D07 006-040-A03 006-042-G11 006-044-F11 006-045-H04 006-046-A09 006-046-C12 006-046-F10 006-046-H08 006-047-G05 006-047-G06 006-048-C05 006-049-A07 006-049-E03 006-050-D08 006-050-E02 006-050-E07 006-050-F11 006-051-D04 006-051-G07 006-052-B06 006-052-B11 006-052-C06 006-053-G03 006-054-C01 006-054-D09 006-056-B11 006-056-C07 006-056-C12 006-057-C05 006-057-E08 006-058-F03 006-059-A03 006-059-C12 006-062-A06 006-062-H04 006-063-B08 006-063-B10 006-063-D11 006-063-H07 006-065-F08 006-067-F07 006-067-G04 006-067-G12 006-068-A12 006-068-E08 006-068-H01 006-069-C01 006-069-E08 006-070-E10 006-071-A02 006-072-C01 006-073-B07 006-073-D02 006-073-F06 006-075-B10 006-075-C01 006-076-E10 006-076-H12 006-077-B10 006-077-F12 006-078-C04 006-078-C10 006-078-H11 006-079-A05 006-079-C01 006-079-E04 006-079-H06 006-080-G05 006-081-C07 006-081-H07 006-082-A09 006-082-D02 006-084-B11 006-085-G10 006-086-A05 006-086-B05 006-086-F09 006-088-B09 006-088-D02 006-088-D10 006-088-F05 006-089-C06 006-092-C07 006-092-C08 006-092-G09 006-093-D12 006-093-H10 006-094-E07 006-095-G01 006-096-A10 006-097-B06 006-097-H12 006-098-A08 006-098-A10 006-098-C10 006-098-D02 006-098-F10 006-099-B08 006-099-D02 006-099-D05 006-099-G10 006-100-G06 006-102-G09 006-104-F06 006-105-A12 006-105-D04 006-105-F05 006-106-B01 006-106-D05 006-107-B01 006-107-C02 006-107-E01 006-107-G03 006-108-D09 006-109-G01 006-109-H07 006-110-C04 006-111-B11 006-112-A02 006-112-E03 006-112-H04 006-113-B07 006-113-C08 006-114-C12 006-114-D06 006-115-B06 006-116-B01 006-116-C02 006-117-B05 006-117-C06 006-117-D10 006-118-D04 006-118-E12 006-119-A06 006-119-A09 006-119-D02 006-119-G07 006-120-B03 006-120-B07 006-120-C01 006-120-E04 006-120-F11 009-014-E11 009-079-C06 009-101-H06 009-113-F07 009-126-G04 009-198-B08 011-011-H03 013-053-A06 AK060886 AK067715 AK103920 AK103937 AK104080 AK104649 AK104760 AK119163 AK119188 AK119515 D21109 J013071M07 J013098E19 J013119C03 J013135O08 J023060H14 J023075M20 J023098P12 J053061C24 J053065C19 J053094K19 J075047M15 J075083H07 J075108K14 J075112B16 J075169L16 J075180P05 J075194D02 J080013D18 J080016G20 J080017E18 J080018J18 J080018N18 J080036G23 J080038O04 J080038P09 J080039N23 J080043F01 J080064J05 J080067C16 J080069B15 J080071H03 J080086L16 J080088H01 J080089B09 J080090K14 J080090N19 J080093H07 J080097B17 J080301J11 J080301K18 J080305K22 J090008D23 J090013H02 J090031N19 J090053G01 TSS from cDNA TSS information 006-070-D05 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 006-070-D05
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 19006182 | -436 |
| TSS clone | T | clone | + | 19006183 | -435 |
| TSS clone | A | clone | + | 19006186 | -432 |
| TSS clone | T | clone | + | 19006190 | -428 |
| TSS clone peak | A | clone | + | 19006191 | -427 |
| TSS clone | G | clone | + | 19006203 | -415 |
| TSS clone | A | clone | + | 19006206 | -412 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GACGTGGC | + | 19005941 | 19005948 | -677 | -670 | |||
| OsREG585 | GACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | GCCCCACA | + | 19005988 | 19005995 | -630 | -623 | |||
| OsREG611 | GCCCCACA | PPDB Motif | PLACE Motif | ||||||
| REG | AGCCCACCAC | + | 19006004 | 19006013 | -614 | -605 | |||
| OsREG462 | AGCCCACC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG599 | GCCCACCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG527 | CCCACCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCACGTC | + | 19006046 | 19006053 | -572 | -565 | |||
| OsREG585 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||