PlantPromoterDB promoter information of 006-073-D02
Summary of Gene (006-073-D02)
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Overview
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Focused view (chromosome 1: 19007568-19008767)
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Genome position
from initiation codon 006-022-C12 006-030-B05 006-031-A01 006-033-E11 006-035-D08 006-042-G11 006-044-F11 006-046-A09 006-050-E02 006-050-E07 006-050-F11 006-051-G07 006-052-B06 006-052-B11 006-052-C06 006-054-C01 006-056-B11 006-056-C07 006-057-C05 006-063-B08 006-063-D11 006-065-F08 006-067-F07 006-067-G04 006-067-G12 006-068-A12 006-068-E08 006-070-D05 006-075-C01 006-078-C10 006-078-H11 006-079-H06 006-080-G05 006-081-H07 006-086-A05 006-088-D02 006-089-C06 006-092-C07 006-096-A10 006-097-B06 006-097-H12 006-100-G06 006-104-F06 006-105-A12 006-109-G01 006-112-A02 006-113-C08 006-114-D06 006-115-B06 006-117-B05 006-118-E12 006-119-A09 006-119-G07 006-120-C01 009-101-H06 011-011-H03 013-053-A06 AK067715 AK103920 AK103937 AK104649 AK104760 AK119163 AK119515 D21109 J013071M07 J013119C03 J013135O08 J023060H14 J023075M20 J023098P12 J053065C19 J075112B16 J080013D18 J080016G20 J080017E18 J080018J18 J080018N18 J080036G23 J080038O04 J080038P09 J080039N23 J080043F01 J080064J05 J080067C16 J080069B15 J080071H03 J080086L16 J080088H01 J080089B09 J080090K14 J080090N19 J080093H07 J080097B17 J080301J11 J080301K18 J080305K22 J090031N19 TSS from cDNA TSS information 006-073-D02 5'->3' (+) Promoter sequence Os01g0501850 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 006-073-D02
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 19006182 | -436 |
| TSS clone | T | clone | + | 19006183 | -435 |
| TSS clone | A | clone | + | 19006186 | -432 |
| TSS clone | T | clone | + | 19006190 | -428 |
| TSS clone peak | A | clone | + | 19006191 | -427 |
| TSS clone | G | clone | + | 19006203 | -415 |
| TSS clone | A | clone | + | 19006206 | -412 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GACGTGGC | + | 19005941 | 19005948 | -677 | -670 | |||
| OsREG585 | GACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | GCCCCACA | + | 19005988 | 19005995 | -630 | -623 | |||
| OsREG611 | GCCCCACA | PPDB Motif | PLACE Motif | ||||||
| REG | AGCCCACCAC | + | 19006004 | 19006013 | -614 | -605 | |||
| OsREG462 | AGCCCACC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG599 | GCCCACCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG527 | CCCACCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCACGTC | + | 19006046 | 19006053 | -572 | -565 | |||
| OsREG585 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||