PlantPromoterDB promoter information of 006-080-H04
Summary of Gene (006-080-H04)
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Overview
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Focused view (chromosome 7: 24019783-24020982)
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Genome position
from initiation codon TSS from cDNA TSS information 006-080-H04 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 006-080-H04
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 24017935 | -898 |
| TSS clone peak | C | clone | + | 24017946 | -887 |
| TSS clone | G | clone | + | 24017949 | -884 |
| TSS clone | A | clone | + | 24017950 | -883 |
| TSS clone | A | clone | + | 24017953 | -880 |
| TSS clone | C | clone | + | 24017955 | -878 |
| TSS clone | A | clone | + | 24017956 | -877 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCTCGCCC | + | 24017741 | 24017748 | -1092 | -1085 | |||
| OsREG549 | CCTCGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGGGCCCCACC | + | 24017759 | 24017769 | -1074 | -1064 | |||
| OsREG567 | CGGGCCCC | PPDB Motif | ACGGGC | PLACE Motif | |||||
| OsREG641 | GGGCCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG631 | GGCCCCAC | PPDB Motif | PLACE Motif | ||||||
| OsREG612 | GCCCCACC | PPDB Motif | PLACE Motif | ||||||
| REG | CGCCACGTC | + | 24017785 | 24017793 | -1048 | -1040 | |||
| OsREG448 | CGCCACGT | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG585 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | CGCGACGCG | + | 24017838 | 24017846 | -995 | -987 | |||
| OsREG556 | CGCGACGC | PPDB Motif | PLACE Motif | CGACG | |||||
| OsREG559 | GCGACGCG | PPDB Motif | PLACE Motif | CGACG | |||||
| REG | GCCCATCC | + | 24017878 | 24017885 | -955 | -948 | |||
| OsREG608 | GCCCATCC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||