PlantPromoterDB promoter information of 006-085-D10
Summary of Gene (006-085-D10)
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Overview
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Focused view (chromosome 8: 21505896-21507095)
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Genome position
from initiation codon AK105990 AK109485 J033095E19 J033121K05 J033145G16 J043034L01 J065054G24 J065060B07 J065064D22 J065073J12 J065124B09 J065152A04 J065162I04 J065166C02 J065169J21 J065187P06 J065205F09 J075080G09 J075089L19 J075105M16 J075111J15 J075134C19 J075144D19 J075162A11 J075170B12 J080311L13 J090013I15 J090062J23 J100034P16 J100036E21 J100065A10 TSS from cDNA TSS information 006-085-D10 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 006-085-D10
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 21506774 | -272 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCGTGGA | + | 21506601 | 21506608 | -445 | -438 | |||
| OsREG636 | GGCGTGGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||