PlantPromoterDB promoter information of 006-093-G05
Summary of Gene (006-093-G05)
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Overview
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Focused view (chromosome 7: 24008803-24010002)
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Genome position
from initiation codon J065058I19 J090065D14 TSS from cDNA TSS information 006-093-G05 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 006-093-G05
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 24017935 | -468 |
| TSS clone peak | C | clone | + | 24017946 | -457 |
| TSS clone | G | clone | + | 24017949 | -454 |
| TSS clone | A | clone | + | 24017950 | -453 |
| TSS clone | A | clone | + | 24017953 | -450 |
| TSS clone | C | clone | + | 24017955 | -448 |
| TSS clone | A | clone | + | 24017956 | -447 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCTCGCCC | + | 24017741 | 24017748 | -662 | -655 | |||
| OsREG549 | CCTCGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGGGCCCCACC | + | 24017759 | 24017769 | -644 | -634 | |||
| OsREG567 | CGGGCCCC | PPDB Motif | ACGGGC | PLACE Motif | |||||
| OsREG641 | GGGCCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG631 | GGCCCCAC | PPDB Motif | PLACE Motif | ||||||
| OsREG612 | GCCCCACC | PPDB Motif | PLACE Motif | ||||||
| REG | CGCCACGTC | + | 24017785 | 24017793 | -618 | -610 | |||
| OsREG448 | CGCCACGT | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG585 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | CGCGACGCG | + | 24017838 | 24017846 | -565 | -557 | |||
| OsREG556 | CGCGACGC | PPDB Motif | PLACE Motif | CGACG | |||||
| OsREG559 | GCGACGCG | PPDB Motif | PLACE Motif | CGACG | |||||
| REG | GCCCATCC | + | 24017878 | 24017885 | -525 | -518 | |||
| OsREG608 | GCCCATCC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | C | clone | + | 24009599 | AK111080, J065058I19, AK111080 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCCCT | + | 24009563 | 24009570 | AK111080, J065058I19 | |
| Y Patch | CTCCCTCT | + | 24009584 | 24009591 | AK111080, J065058I19 | |
| Y Patch | TTCCCCTCTC | + | 24009597 | 24009606 | AK111080, J065058I19 | |
| Y Patch | CTCTCCCCC | + | 24009612 | 24009620 | AK111080, J065058I19 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||