PlantPromoterDB promoter information of 006-096-B12
Summary of Gene (006-096-B12)
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Overview
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Focused view (chromosome 7: 23149157-23150356)
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Genome position
from initiation codon TSS from cDNA TSS information 006-096-B12 5'->3' (+) Promoter sequence AK068466
AK104858 AK120271 AY374513 AY374514 J013047M22 J013050C16 J013071C23 J013126F22 J013155K02 J013170J03 J033031C06 J033067N11 J033098C14 J033110O21 J065204B11 J090006M07 J090034G13 J090039H15 J090068M19 J090076F24 J090077N06 J090097E03 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 006-096-B12
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 23147623 | -34 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCCCTT | + | 23147583 | 23147591 | -74 | -66 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGGTCCCA | + | 23147377 | 23147386 | -280 | -271 | |||
| OsREG622 | GTGGGTCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| OsREG637 | TGGGTCCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| OsREG648 | GGGTCCCA | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | GCCCGGCCCAAAA | + | 23147398 | 23147410 | -259 | -247 | |||
| OsREG614 | GCCCGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG538 | CCCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG542 | CCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | CGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG592 | GCCCAAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCTGGGCCGAAA | + | 23147417 | 23147428 | -240 | -229 | |||
| OsREG620 | GCTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG565 | CTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG658 | TGGGCCGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG642 | GGGCCGAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG634 | GGCCGAAA | PPDB Motif | PLACE Motif | ||||||
| REG | ATCCGACGTGGC | + | 23147457 | 23147468 | -200 | -189 | |||
| OsREG483 | ATCCGACG | PPDB Motif | CCGAC | PLACE Motif | CGACG | ||||
| OsREG585 | GACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | GCCCAAAT | + | 23147505 | 23147512 | -152 | -145 | |||
| OsREG493 | GCCCAAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||