Summary of Gene (006-096-F12)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information 006-096-F12 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 1722140 | -128 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCACTATAAATA | - | 1722167 | 1722178 | -155 | -166 |
Y Patch | CTCCTCCTC | - | 1722093 | 1722101 | -81 | -89 |
Y Patch | TCCCTCTC | - | 1722179 | 1722186 | -167 | -174 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCAAGCCCATCAGGCCCACCAAC | - | 1722202 | 1722224 | -190 | -212 | |||
OsREG519 | CCAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG496 | CAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG429 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG466 | AGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG607 | GCCCATCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG646 | TCAGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG513 | CAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG472 | AGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG599 | GCCCACCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG520 | CCACCAAC | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | AGCCCAATAAGGCCCATCT | - | 1722257 | 1722275 | -245 | -263 | |||
OsREG460 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG596 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG430 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG474 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG456 | GCCCATCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CAAGGCCCATAC | - | 1722283 | 1722294 | -271 | -282 | |||
OsREG497 | CAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG430 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG474 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG606 | GCCCATAC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |