PlantPromoterDB promoter information of 006-098-D12
Summary of Gene (006-098-D12)
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Overview
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Focused view (chromosome 1: 31041296-31040097)
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Genome position
from initiation codon TSS from cDNA TSS information 006-098-D12 5'->3' (-) Promoter sequence AK072799
J013049G14 J023136E17 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of 006-098-D12
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 31038743 | -97 |
| TSS clone peak | A | clone | - | 31038718 | -72 |
| TSS clone | G | clone | - | 31038664 | -18 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGCCGGA | - | 31038793 | 31038800 | -147 | -154 | |||
| OsREG644 | GGGCCGGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TGAGGGAC | - | 31038836 | 31038843 | -190 | -197 | |||
| OsREG652 | TGAGGGAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | TGTGGGCCCCACA | - | 31038965 | 31038977 | -319 | -331 | |||
| OsREG627 | TGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GTGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG647 | TGGGCCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG641 | GGGCCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG631 | GGCCCCAC | PPDB Motif | PLACE Motif | ||||||
| OsREG611 | GCCCCACA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | + | 31041259 | AK072799, J013049G14, J023136E17, AK072799 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCCCCCTC | + | 31041244 | 31041251 | AK072799, J013049G14, J023136E17 | |
| Y Patch | CCCCTCCCCT | + | 31041292 | 31041301 | AK072799, J013049G14, J023136E17 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TGAGGGAC | + | 31041085 | 31041092 | AK072799, J013049G14, J023136E17 | ||||
| OsREG652 | TGAGGGAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | CTTGGGCCGGT | + | 31041137 | 31041147 | AK072799, J013049G14, J023136E17 | ||||
| OsREG581 | CTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG542 | TGGGCCGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG440 | GGGCCGGT | PPDB Motif | GCCCA, AACCG(G/A) | PLACE Motif | |||||
| REG | TCATGGGCT | + | 31041156 | 31041164 | AK072799, J013049G14, J023136E17 | ||||
| OsREG609 | TCATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG467 | CATGGGCT | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||