Summary of Gene (006-098-D12)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information 006-098-D12 5'->3' (-) Promoter sequence AK072799
J013049G14 J023136E17 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 31038743 | -97 |
TSS clone peak | A | clone | - | 31038718 | -72 |
TSS clone | G | clone | - | 31038664 | -18 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGGCCGGA | - | 31038793 | 31038800 | -147 | -154 | |||
OsREG644 | GGGCCGGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGAGGGAC | - | 31038836 | 31038843 | -190 | -197 | |||
OsREG652 | TGAGGGAC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | TGTGGGCCCCACA | - | 31038965 | 31038977 | -319 | -331 | |||
OsREG627 | TGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | TGGGCCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG611 | GCCCCACA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | + | 31041259 | AK072799, J013049G14, J023136E17, AK072799 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCCCCCTC | + | 31041244 | 31041251 | AK072799, J013049G14, J023136E17 | |
Y Patch | CCCCTCCCCT | + | 31041292 | 31041301 | AK072799, J013049G14, J023136E17 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TGAGGGAC | + | 31041085 | 31041092 | AK072799, J013049G14, J023136E17 | ||||
OsREG652 | TGAGGGAC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | CTTGGGCCGGT | + | 31041137 | 31041147 | AK072799, J013049G14, J023136E17 | ||||
OsREG581 | CTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG440 | GGGCCGGT | PPDB Motif | GCCCA, AACCG(G/A)  | PLACE Motif |   | ||||
REG | TCATGGGCT | + | 31041156 | 31041164 | AK072799, J013049G14, J023136E17 | ||||
OsREG609 | TCATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG467 | CATGGGCT | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   |