PlantPromoterDB promoter information of 006-100-E07
Summary of Gene (006-100-E07)
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Overview
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Focused view (chromosome 1: 224786-225985)
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Genome position
from initiation codon J023095C18 TSS from cDNA TSS information 006-100-E07 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 006-100-E07
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 225897 | -839 |
| TSS clone | C | clone | + | 226139 | -597 |
| TSS clone peak | A | clone | + | 226179 | -557 |
| TSS clone | A | clone | + | 226182 | -554 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTCC | + | 226153 | 226160 | -583 | -576 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGGGGCCC | + | 225633 | 225640 | -1103 | -1096 | |||
| OsREG641 | TGGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGGACCCG | + | 225755 | 225762 | -981 | -974 | |||
| OsREG569 | GGGACCCG | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | GTGGGTCC | + | 225782 | 225789 | -954 | -947 | |||
| OsREG622 | GTGGGTCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | TTATGGGCCGTGG | + | 226048 | 226060 | -688 | -676 | |||
| OsREG605 | TTATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG630 | TATGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG490 | ATGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | TGGGCCGT | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG504 | GGGCCGTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG521 | GGCCGTGG | PPDB Motif | PLACE Motif | ||||||
| REG | ACCCGCGC | + | 226063 | 226070 | -673 | -666 | |||
| OsREG439 | ACCCGCGC | PPDB Motif | PLACE Motif | ||||||
| REG | GGGCCGGG | + | 226072 | 226079 | -664 | -657 | |||
| OsREG538 | GGGCCGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||