Summary of Gene (006-100-E07)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J023095C18 TSS from cDNA TSS information 006-100-E07 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 225897 | -839 |
TSS clone | C | clone | + | 226139 | -597 |
TSS clone peak | A | clone | + | 226179 | -557 |
TSS clone | A | clone | + | 226182 | -554 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCTCC | + | 226153 | 226160 | -583 | -576 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGGGGCCC | + | 225633 | 225640 | -1103 | -1096 | |||
OsREG641 | TGGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGACCCG | + | 225755 | 225762 | -981 | -974 | |||
OsREG569 | GGGACCCG | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | GTGGGTCC | + | 225782 | 225789 | -954 | -947 | |||
OsREG622 | GTGGGTCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | TTATGGGCCGTGG | + | 226048 | 226060 | -688 | -676 | |||
OsREG605 | TTATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG504 | GGGCCGTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG521 | GGCCGTGG | PPDB Motif |   | PLACE Motif |   | ||||
REG | ACCCGCGC | + | 226063 | 226070 | -673 | -666 | |||
OsREG439 | ACCCGCGC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGGCCGGG | + | 226072 | 226079 | -664 | -657 | |||
OsREG538 | GGGCCGGG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |