PlantPromoterDB promoter information of 006-100-E07
Summary of Gene (006-100-E07)
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Overview
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Focused view (chromosome 1: 226286-227485)
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Genome position
from initiation codon 006-026-B08 006-028-D06 006-030-C01 006-034-A11 006-037-B09 006-037-B10 006-042-A01 006-043-A09 006-055-E02 006-061-B12 006-064-F06 006-078-G10 006-079-G09 006-080-A03 006-080-B08 006-084-H05 006-110-E01 006-110-G08 006-118-D10 006-119-B01 006-120-C12 009-188-F02 AK060132 AK071375 AK104555 AK104820 J013036G10 J013040J20 J013091F10 J013152O17 J023044K17 J023052J22 J023081F23 J023088I04 J023092D12 J023095C18 J023121J21 J023123D06 J023128J03 J023134F19 J023138K23 J023150K17 J033103G13 J043040L09 J065012F09 J065014I21 J065077C07 J065095D23 J090021E10 J100017L18 J100045M19 TSS from cDNA TSS information 006-100-E07 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 006-100-E07
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 225897 | -839 |
| TSS clone | C | clone | + | 226139 | -597 |
| TSS clone peak | A | clone | + | 226179 | -557 |
| TSS clone | A | clone | + | 226182 | -554 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTCC | + | 226153 | 226160 | -583 | -576 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGGGGCCC | + | 225633 | 225640 | -1103 | -1096 | |||
| OsREG641 | TGGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGGACCCG | + | 225755 | 225762 | -981 | -974 | |||
| OsREG569 | GGGACCCG | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | GTGGGTCC | + | 225782 | 225789 | -954 | -947 | |||
| OsREG622 | GTGGGTCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | TTATGGGCCGTGG | + | 226048 | 226060 | -688 | -676 | |||
| OsREG605 | TTATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG630 | TATGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG490 | ATGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | TGGGCCGT | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG504 | GGGCCGTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG521 | GGCCGTGG | PPDB Motif | PLACE Motif | ||||||
| REG | ACCCGCGC | + | 226063 | 226070 | -673 | -666 | |||
| OsREG439 | ACCCGCGC | PPDB Motif | PLACE Motif | ||||||
| REG | GGGCCGGG | + | 226072 | 226079 | -664 | -657 | |||
| OsREG538 | GGGCCGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||