PlantPromoterDB promoter information of 006-114-B07
Summary of Gene (006-114-B07)
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Overview
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Focused view (chromosome 2: 35811501-35812700)
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Genome position
from initiation codon AK061607 AK067252 AK104489 J013098L06 J075088I01 TSS from cDNA TSS information 006-114-B07 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 006-114-B07
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | G | clone | + | 35812232 | AK061607, AK061607, J075088I01 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCCTC | + | 35812223 | 35812230 | AK061607, J075088I01 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TGTTGGGCCAT | + | 35811991 | 35812001 | AK061607, J075088I01 | ||||
| OsREG594 | TGTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG626 | GTTGGGCC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | |||||
| OsREG659 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG487 | TGGGCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ACGTGGGCT | + | 35812038 | 35812046 | AK061607, J075088I01 | ||||
| OsREG449 | ACGTGGGC | PPDB Motif | GCCCA, ACGT | PLACE Motif | ACGTSSSC | ||||
| OsREG463 | CGTGGGCT | PPDB Motif | GCCCA | PLACE Motif | |||||