PlantPromoterDB promoter information of 006-116-B01
Summary of Gene (006-116-B01)
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Overview
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Focused view (chromosome 1: 19001455-19002654)
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Genome position
from initiation codon TSS from cDNA TSS information 006-116-B01 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 006-116-B01
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 19006182 | -73 |
| TSS clone | T | clone | + | 19006183 | -72 |
| TSS clone | A | clone | + | 19006186 | -69 |
| TSS clone | T | clone | + | 19006190 | -65 |
| TSS clone peak | A | clone | + | 19006191 | -64 |
| TSS clone | G | clone | + | 19006203 | -52 |
| TSS clone | A | clone | + | 19006206 | -49 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GACGTGGC | + | 19005941 | 19005948 | -314 | -307 | |||
| OsREG585 | GACGTGGC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | GCCCCACA | + | 19005988 | 19005995 | -267 | -260 | |||
| OsREG611 | GCCCCACA | PPDB Motif | PLACE Motif | ||||||
| REG | AGCCCACCAC | + | 19006004 | 19006013 | -251 | -242 | |||
| OsREG462 | AGCCCACC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG599 | GCCCACCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG527 | CCCACCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCACGTC | + | 19006046 | 19006053 | -209 | -202 | |||
| OsREG585 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||