Summary of Gene (009-009-B02)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK105284 J065053P20 J065130F09 J065143A19 J065185P06 J100061J04 J100064M21 TSS from cDNA TSS information 009-009-B02 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 30684099 | -82 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCGCTATAAAAG | - | 30684129 | 30684140 | -112 | -123 |
Y Patch | CCTCCCTC | - | 30684075 | 30684082 | -58 | -65 |
Y Patch | TCTCCTCTC | - | 30684090 | 30684098 | -73 | -81 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TAGGCCCAGTA | - | 30684165 | 30684175 | -148 | -158 | |||
OsREG656 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG473 | AGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG454 | GGCCCAGT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG604 | GCCCAGTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAATGGGCCGTTT | - | 30684191 | 30684203 | -174 | -186 | |||
OsREG422 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG423 | GGGCCGTT | PPDB Motif | GCCCA, AAACG(C/G)  | PLACE Motif |   | ||||
OsREG420 | GGCCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |