PlantPromoterDB promoter information of 009-009-B02
Summary of Gene (009-009-B02)
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Overview
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Focused view (chromosome 2: 30685017-30683818)
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Genome position
from initiation codon AK105284 J065053P20 J065130F09 J065143A19 J065185P06 J100061J04 J100064M21 TSS from cDNA TSS information 009-009-B02 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of 009-009-B02
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 30684099 | -82 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCGCTATAAAAG | - | 30684129 | 30684140 | -112 | -123 |
| Y Patch | CCTCCCTC | - | 30684075 | 30684082 | -58 | -65 |
| Y Patch | TCTCCTCTC | - | 30684090 | 30684098 | -73 | -81 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAGGCCCAGTA | - | 30684165 | 30684175 | -148 | -158 | |||
| OsREG656 | TAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG473 | AGGCCCAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG454 | GGCCCAGT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG604 | GCCCAGTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AAATGGGCCGTTT | - | 30684191 | 30684203 | -174 | -186 | |||
| OsREG422 | AAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG431 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG490 | ATGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | TGGGCCGT | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG423 | GGGCCGTT | PPDB Motif | GCCCA, AAACG(C/G) | PLACE Motif | |||||
| OsREG420 | GGCCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||