PlantPromoterDB promoter information of 009-014-G12
Summary of Gene (009-014-G12)
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Overview
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Focused view (chromosome 4: 21373605-21374804)
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Genome position
from initiation codon 015-048-C08 015-085-E11 AK072050 AK106337 J065037C09 J075125G18 TSS from cDNA TSS information 009-014-G12 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 009-014-G12
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 21373113 | -742 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCCCT | + | 21373074 | 21373081 | -781 | -774 |
| Y Patch | CTCCTCCTCCTCCTC | + | 21373144 | 21373158 | -711 | -697 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCCGGCCC | + | 21372820 | 21372827 | -1035 | -1028 | |||
| OsREG538 | CCCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGCGTCGCGTC | + | 21372991 | 21373001 | -864 | -854 | |||
| OsREG559 | CGCGTCGC | PPDB Motif | PLACE Motif | CGACG | |||||
| OsREG556 | GCGTCGCG | PPDB Motif | PLACE Motif | CGACG | |||||
| OsREG583 | GTCGCGTC | PPDB Motif | PLACE Motif | ||||||
| REG | CCCCACACG | + | 21373036 | 21373044 | -819 | -811 | |||
| OsREG535 | CCCCACAC | PPDB Motif | PLACE Motif | ||||||
| OsREG526 | CCCACACG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TCCACGCC | + | 21373060 | 21373067 | -795 | -788 | |||
| OsREG636 | TCCACGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||