Summary of Gene (009-014-G12)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 015-048-C08 015-085-E11 AK072050 AK106337 J065037C09 J075125G18 TSS from cDNA TSS information 009-014-G12 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 21373113 | -742 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCCCT | + | 21373074 | 21373081 | -781 | -774 |
Y Patch | CTCCTCCTCCTCCTC | + | 21373144 | 21373158 | -711 | -697 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCGGCCC | + | 21372820 | 21372827 | -1035 | -1028 | |||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGCGTCGCGTC | + | 21372991 | 21373001 | -864 | -854 | |||
OsREG559 | CGCGTCGC | PPDB Motif |   | PLACE Motif | CGACG  | ||||
OsREG556 | GCGTCGCG | PPDB Motif |   | PLACE Motif | CGACG  | ||||
OsREG583 | GTCGCGTC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCCCACACG | + | 21373036 | 21373044 | -819 | -811 | |||
OsREG535 | CCCCACAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG526 | CCCACACG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCCACGCC | + | 21373060 | 21373067 | -795 | -788 | |||
OsREG636 | TCCACGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |