Summary of Gene (009-033-D05)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK104968 J065104G16 J065152D09 J065162J09 J065197C14 J065213E17 J065215D11 J075001J15 J075026M11 J075142G03 J075178H04 J100069P18 TSS from cDNA TSS information 009-033-D05 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 16924913 | -4 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCCGGCCC | + | 16924741 | 16924749 | -176 | -168 | |||
OsREG614 | GCCCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTTTGGGCCTTG | + | 16924752 | 16924763 | -165 | -154 | |||
OsREG592 | TTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG430 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG497 | GGGCCTTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCCGGGCC | + | 16924769 | 16924776 | -148 | -141 | |||
OsREG633 | TCCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATTGGGCCGGT | + | 16924790 | 16924800 | -127 | -117 | |||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG440 | GGGCCGGT | PPDB Motif | GCCCA, AACCG(G/A)  | PLACE Motif |   | ||||
REG | TCCGGGCC | + | 16924843 | 16924850 | -74 | -67 | |||
OsREG633 | TCCGGGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |