Summary of Gene (009-129-D11)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 009-147-E04 009-169-C11 AK058730 AK121459 J023001K23 J023107J19 J023143J09 J065049D04 J065092I06 J065188H04 TSS from cDNA TSS information 009-129-D11 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 21881246 | -847 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCGCTATATATG | + | 21881202 | 21881213 | -891 | -880 |
Y Patch | TCCTCCCCT | + | 21881258 | 21881266 | -835 | -827 |
Y Patch | TCTTCCCC | + | 21881284 | 21881291 | -809 | -802 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTGTGGGCT | + | 21880953 | 21880961 | -1140 | -1132 | |||
OsREG597 | TTGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG461 | TGTGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCATGGGCT | + | 21880967 | 21880975 | -1126 | -1118 | |||
OsREG609 | TCATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG467 | CATGGGCT | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
REG | TCTGGCCCATT | + | 21880982 | 21880992 | -1111 | -1101 | |||
OsREG638 | TCTGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG577 | CTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCAGCCCATG | + | 21881012 | 21881021 | -1081 | -1072 | |||
OsREG591 | GCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG491 | CAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG467 | AGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
REG | TCCGGCCCATGGGCCGTGGGCCTC | + | 21881093 | 21881116 | -1000 | -977 | |||
OsREG644 | TCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG525 | GCCCATGGGC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG517 | GGCCCATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG490 | CGGCCCATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG504 | GGGCCGTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG521 | GGCCGTGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG547 | CCGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG472 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG587 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATCCAACGG | + | 21881146 | 21881154 | -947 | -939 | |||
OsREG481 | ATCCAACG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
OsREG548 | TCCAACGG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | CGTTCCGT | + | 21881193 | 21881200 | -900 | -893 | |||
OsREG444 | CGTTCCGT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |