PlantPromoterDB promoter information of 009-149-F12
Summary of Gene (009-149-F12)
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Overview
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Focused view (chromosome 2: 20508976-20507777)
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Genome position
from initiation codon TSS from cDNA TSS information 009-149-F12 5'->3' (-) Promoter sequence 006-022-D07
012-014-E01 AB062681 AK061722 AK106147 AK121892 J013045C19 J013170C10 J033058C15 J033105C15 J033120B19 J065029J08 J065098B15 J065098J23 J100036F05 J100077E11 J100087A08 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of 009-149-F12
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 20507340 | -114 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACTGACA | - | 20507397 | 20507404 | -171 | -178 | |||
| OsREG510 | CACTGACA | PPDB Motif | PLACE Motif | TGAC | |||||
| REG | ATCCGACGG | - | 20507406 | 20507414 | -180 | -188 | |||
| OsREG483 | ATCCGACG | PPDB Motif | CCGAC | PLACE Motif | CGACG | ||||
| OsREG546 | TCCGACGG | PPDB Motif | CCGAC | PLACE Motif | CGACG | ||||
| REG | TAGGCCCAGA | - | 20507544 | 20507553 | -318 | -327 | |||
| OsREG656 | TAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG473 | AGGCCCAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG629 | GGCCCAGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GAGGCCCAAAC | - | 20507564 | 20507574 | -338 | -348 | |||
| OsREG587 | GAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG471 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG593 | GCCCAAAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGCCGGGCCGGG | - | 20507581 | 20507592 | -355 | -366 | |||
| OsREG614 | GGCCGGGC | PPDB Motif | PLACE Motif | ||||||
| OsREG616 | GCCGGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG544 | CCGGGCCG | PPDB Motif | PLACE Motif | ||||||
| OsREG538 | GGGCCGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | G | clone | + | 20507823 | AK121892, AK121892, AK061722, AK106147, AB062681 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||