PlantPromoterDB promoter information of 009-187-D06
Summary of Gene (009-187-D06)
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Overview
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Focused view (chromosome 6: 21885445-21884246)
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Genome position
from initiation codon 006-026-G11 006-042-C08 006-054-F08 006-089-G06 006-098-A03 006-099-D11 006-102-G11 006-105-E09 006-109-D07 009-121-F11 009-197-G07 013-018-C04 014-076-F02 AK060896 AK104528 AK104638 AK121675 J013063E23 J023121H15 J033068F09 J043016P10 J043027P20 J065036N04 J075100H09 J075171H04 J075176F05 J090008B16 J090010M11 J090023C18 J090063J02 J090068I11 J090071L09 J090083M21 TSS from cDNA TSS information 009-187-D06 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of 009-187-D06
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 21885159 | -64 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TGTATATATACAC | - | 21885183 | 21885195 | -88 | -100 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACACACC | - | 21885244 | 21885251 | -149 | -156 | |||
| OsREG499 | CACACACC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||