Summary of Gene (011-052-H03)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK121452 J023142L20 J065168E04 J080031L07 J080048H11 J080058C12 J080093F10 TSS from cDNA TSS information 011-052-H03 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 8796835 | -72 |
TSS clone peak | A | clone | - | 8796832 | -69 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCCCCCTC | - | 8796855 | 8796862 | -92 | -99 |
Y Patch | TCCTTCCTCT | - | 8796865 | 8796874 | -102 | -111 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGTCCACG | - | 8796895 | 8796902 | -132 | -139 | |||
OsREG570 | GGTCCACG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCGAGCCG | - | 8796964 | 8796971 | -201 | -208 | |||
OsREG540 | CCGAGCCG | PPDB Motif |   | PLACE Motif |   | ||||
REG | TAAGCCCAAT | - | 8796985 | 8796994 | -222 | -231 | |||
OsREG655 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG426 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG460 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTTTGGGCCGTG | - | 8797000 | 8797011 | -237 | -248 | |||
OsREG593 | GTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG504 | GGGCCGTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTTTGGGCCAG | - | 8797038 | 8797048 | -275 | -285 | |||
OsREG592 | TTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG577 | TGGGCCAG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |