PlantPromoterDB promoter information of 011-052-H03
Summary of Gene (011-052-H03)
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Overview
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Focused view (chromosome 8: 8795963-8794764)
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Genome position
from initiation codon AK121452 J023142L20 J065168E04 J080031L07 J080048H11 J080058C12 J080093F10 TSS from cDNA TSS information 011-052-H03 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of 011-052-H03
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 8796835 | -72 |
| TSS clone peak | A | clone | - | 8796832 | -69 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCCCCTC | - | 8796855 | 8796862 | -92 | -99 |
| Y Patch | TCCTTCCTCT | - | 8796865 | 8796874 | -102 | -111 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGTCCACG | - | 8796895 | 8796902 | -132 | -139 | |||
| OsREG570 | GGTCCACG | PPDB Motif | PLACE Motif | ||||||
| REG | CCGAGCCG | - | 8796964 | 8796971 | -201 | -208 | |||
| OsREG540 | CCGAGCCG | PPDB Motif | PLACE Motif | ||||||
| REG | TAAGCCCAAT | - | 8796985 | 8796994 | -222 | -231 | |||
| OsREG655 | TAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG426 | AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG460 | AGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GTTTGGGCCGTG | - | 8797000 | 8797011 | -237 | -248 | |||
| OsREG593 | GTTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | TTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | TGGGCCGT | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG504 | GGGCCGTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TTTTGGGCCAG | - | 8797038 | 8797048 | -275 | -285 | |||
| OsREG592 | TTTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | TTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG659 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG577 | TGGGCCAG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||