Summary of Gene (012-011-E01)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK101946 J013132G01 J013170M12 J033075C16 J043013D08 J065089G19 J065197K19 J075161L21 TSS from cDNA TSS information 012-011-E01 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 6709532 | -870 |
TSS clone peak | G | clone | - | 6709143 | -481 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCCTCTCCTCTCTTCCCC | - | 6709508 | 6709526 | -846 | -864 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGCCGTCC | - | 6709588 | 6709595 | -926 | -933 | |||
OsREG624 | GGCCGTCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GAGACGTGACGTG | - | 6709640 | 6709652 | -978 | -990 | |||
OsREG506 | GAGACGTG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG505 | GTGACGTG | PPDB Motif | ACGT  | PLACE Motif | TGAC  | ||||
REG | ATGGCCCATTT | - | 6709708 | 6709718 | -1046 | -1056 | |||
OsREG487 | ATGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG488 | TGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG422 | GCCCATTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GAGGCCCACGT | - | 6709723 | 6709733 | -1061 | -1071 | |||
OsREG587 | GAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG472 | AGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG571 | GGCCCACG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG449 | GCCCACGT | PPDB Motif | GCCCA, ACGT  | PLACE Motif | ACGTSSSC  | ||||
REG | GTTTGGGCCGACCGTTG | - | 6709746 | 6709762 | -1084 | -1100 | |||
OsREG593 | GTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG495 | GACCGTTG | PPDB Motif | CCAACGG  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |