PlantPromoterDB promoter information of 012-011-E01
Summary of Gene (012-011-E01)
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Overview
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Focused view (chromosome 1: 6709662-6708463)
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Genome position
from initiation codon AK101946 J013132G01 J013170M12 J033075C16 J043013D08 J065089G19 J065197K19 J075161L21 TSS from cDNA TSS information 012-011-E01 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of 012-011-E01
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 6709532 | -870 |
| TSS clone peak | G | clone | - | 6709143 | -481 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCCTCTCCTCTCTTCCCC | - | 6709508 | 6709526 | -846 | -864 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCGTCC | - | 6709588 | 6709595 | -926 | -933 | |||
| OsREG624 | GGCCGTCC | PPDB Motif | PLACE Motif | ||||||
| REG | GAGACGTGACGTG | - | 6709640 | 6709652 | -978 | -990 | |||
| OsREG506 | GAGACGTG | PPDB Motif | ACGT | PLACE Motif | |||||
| OsREG505 | GTGACGTG | PPDB Motif | ACGT | PLACE Motif | TGAC | ||||
| REG | ATGGCCCATTT | - | 6709708 | 6709718 | -1046 | -1056 | |||
| OsREG487 | ATGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG488 | TGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG431 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG422 | GCCCATTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GAGGCCCACGT | - | 6709723 | 6709733 | -1061 | -1071 | |||
| OsREG587 | GAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG472 | AGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG571 | GGCCCACG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG449 | GCCCACGT | PPDB Motif | GCCCA, ACGT | PLACE Motif | ACGTSSSC | ||||
| REG | GTTTGGGCCGACCGTTG | - | 6709746 | 6709762 | -1084 | -1100 | |||
| OsREG593 | GTTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | TTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG658 | TGGGCCGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG495 | GACCGTTG | PPDB Motif | CCAACGG | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||