PlantPromoterDB promoter information of 012-092-G08
Summary of Gene (012-092-G08)
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Overview
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Focused view (chromosome 8: 23426455-23427654)
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Genome position
from initiation codon Os08g0473700 TSS from cDNA TSS information 012-092-G08 5'->3' (+) Promoter sequence J065031A07
J065129E01 J065134I05 J065212K13 J065217M14 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 012-092-G08
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 23429295 | -160 |
| TSS clone peak | A | clone | + | 23429363 | -92 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTATATATG | + | 23429328 | 23429337 | -127 | -118 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACCGGGCCCC | + | 23429194 | 23429203 | -261 | -252 | |||
| OsREG441 | ACCGGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG543 | CCGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG567 | CGGGCCCC | PPDB Motif | ACGGGC | PLACE Motif | |||||
| REG | TCCACGCC | + | 23429255 | 23429262 | -200 | -193 | |||
| OsREG636 | TCCACGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||