PlantPromoterDB promoter information of 012-092-G08
Summary of Gene (012-092-G08)
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Overview
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Focused view (chromosome 8: 23429255-23430454)
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Genome position
from initiation codon 012-025-A10 012-025-C03 012-030-H02 012-033-A03 012-044-F02 012-046-F01 012-050-C04 012-051-G08 012-051-H03 012-056-F12 012-062-E07 012-067-C12 012-073-B07 012-078-H09 012-083-G12 012-086-C12 012-089-H12 012-091-B09 014-045-D08 015-004-H02 015-005-G05 015-007-D06 015-014-G04 015-019-G11 015-037-G04 015-044-D02 015-046-A05 015-049-D09 015-052-F12 015-054-E03 015-066-D02 015-070-H03 015-074-H10 015-077-C04 015-090-A10 015-091-F11 016-002-G04 016-004-E03 016-008-H10 016-015-G12 016-018-G01 016-023-C07 016-023-G06 016-027-G04 016-039-G04 016-044-A06 016-053-H06 016-057-G08 016-063-H03 016-066-A01 016-066-E08 016-072-G03 016-074-A10 016-088-C06 016-090-D01 AK073487 AK119561 AK119761 J033024B15 J033040A17 J033041J03 J033093F11 J033117E15 J033128F11 J065006O09 J065010E21 J065011P15 J065013M15 J065019E20 J065021I21 J065022D23 J065024L10 J065026P16 J065027C20 J065027G06 J065027G23 J065028B11 J065030J05 J065031G17 J065034J07 J065037N01 J065040H20 J065041C22 J065044A21 J065044L06 J065045J02 J065048D10 J065049H23 J065049I21 J065052D03 J065055D22 J065057L13 J065058B13 J065059B04 J065059C05 J065059H01 J065059K01 J065063G19 J065073E20 J065075I10 J065081I24 J065084E05 J065084E12 J065084J12 J065086H18 J065087F07 J065095J02 J065097E24 J065102I06 J065104N21 J065105A16 J065107C13 J065108N11 J065112I04 J065112J05 J065112K17 J065115I05 J065120J21 J065120K18 J065121L19 J065123K20 J065123M10 J065124L18 J065127E19 J065128B05 J065130F11 J065130P06 J065132K13 J065134I17 J065139I11 J065141G14 J065141O04 J065146P07 J065148L24 J065154H20 J065155I05 J065165F05 J065166I20 J065168D14 J065168F12 J065169F17 J065169J11 J065169O14 J065171E05 J065171L21 J065175G24 J065178M19 J065179C17 J065179E04 J065180C03 J065182D08 J065183P17 J065188N09 J065190G15 J065190N03 J065191H11 J065193C13 J065193G19 J065199F19 J065202L20 J065204K12 J065206H08 J065208E02 J065210O09 J065211L19 J065211N19 J065212I06 J065213P21 J065215C14 J100032J03 M24287 TSS from cDNA TSS information 012-092-G08 5'->3' (+) Promoter sequence 015-065-A07
AK064124 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 012-092-G08
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 23429295 | -160 |
| TSS clone peak | A | clone | + | 23429363 | -92 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TCTATATATG | + | 23429328 | 23429337 | -127 | -118 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACCGGGCCCC | + | 23429194 | 23429203 | -261 | -252 | |||
| OsREG441 | ACCGGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG543 | CCGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG567 | CGGGCCCC | PPDB Motif | ACGGGC | PLACE Motif | |||||
| REG | TCCACGCC | + | 23429255 | 23429262 | -200 | -193 | |||
| OsREG636 | TCCACGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||