PlantPromoterDB promoter information of 013-016-H01
Summary of Gene (013-016-H01)
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Overview
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Focused view (chromosome 4: 33792139-33793338)
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Genome position
from initiation codon AB055495 AF072849 AK062107 AK099088 J013038I16 J013038J23 J013038L17 J013038N18 J013038O18 J013124A09 J023007N04 J033023C02 J033030M18 J033051A13 J033068I09 J033100E04 J065153E19 J065207I02 J075007A07 J075036M04 J075147I03 J075197L11 TSS from cDNA TSS information 013-016-H01 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 013-016-H01
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 33793020 | -119 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCCCTCCTCTT | + | 33793046 | 33793056 | -93 | -83 |
| Y Patch | TCTTCCCC | + | 33793058 | 33793065 | -81 | -74 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AACTGGGC | + | 33792887 | 33792894 | -252 | -245 | |||
| OsREG425 | AACTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CAAGTGGGCCAA | + | 33792935 | 33792946 | -204 | -193 | |||
| OsREG498 | CAAGTGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG478 | AGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG654 | GTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG660 | TGGGCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AATTGGGCCGTCC | + | 33792957 | 33792969 | -182 | -170 | |||
| OsREG433 | AATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | TGGGCCGT | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG584 | GGGCCGTC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG624 | GGCCGTCC | PPDB Motif | PLACE Motif | ||||||
| REG | CCCGGCCC | + | 33792972 | 33792979 | -167 | -160 | |||
| OsREG538 | CCCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||