Summary of Gene (013-065-B10)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information 013-065-B10 5'->3' (+) Promoter sequence J065019B03
J065047C24 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 30219122 | -481 |
TSS clone peak | G | clone | + | 30219310 | -293 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GGCTATATACAC | + | 30219270 | 30219281 | -333 | -322 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTATGGGC | + | 30219034 | 30219041 | -569 | -562 | |||
OsREG606 | GTATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGACACGTCTC | + | 30219212 | 30219222 | -391 | -381 | |||
OsREG452 | CGACACGT | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG506 | CACGTCTC | PPDB Motif | ACGT  | PLACE Motif |   | ||||
REG | CCACGCGTCGC | + | 30219230 | 30219240 | -373 | -363 | |||
OsREG443 | CCACGCGT | PPDB Motif |   | PLACE Motif |   | ||||
OsREG559 | CGCGTCGC | PPDB Motif |   | PLACE Motif | CGACG  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |