PlantPromoterDB promoter information of 014-051-A08
Summary of Gene (014-051-A08)
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Overview
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Focused view (chromosome 5: 14971206-14972405)
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Genome position
from initiation codon AK066255 AK103959 AK105939 AY870611 J100029J01 J100064E11 J100068H13 TSS from cDNA TSS information 014-051-A08 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 014-051-A08
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 14969392 | -114 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGCGTGGGCCGC | + | 14969099 | 14969110 | -407 | -396 | |||
| OsREG530 | CGCGTGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG602 | GCGTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG571 | CGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG564 | GTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG618 | TGGGCCGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCGAGCCG | + | 14969150 | 14969157 | -356 | -349 | |||
| OsREG540 | CCGAGCCG | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCACGC | + | 14969175 | 14969182 | -331 | -324 | |||
| OsREG602 | GCCCACGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGTCCCACCTG | + | 14969241 | 14969251 | -265 | -255 | |||
| OsREG650 | GGTCCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| OsREG651 | GTCCCACC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| OsREG514 | CCCACCTG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||