Summary of Gene (014-071-A05)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information 014-071-A05 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | T | clone | + | 520220 | -180 |
TSS clone peak | G | clone | + | 520247 | -153 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTGGCGTG | + | 519967 | 519974 | -433 | -426 | |||
OsREG502 | GTGGCGTG | PPDB Motif |   | PLACE Motif |   | ||||
REG | AGGTGGGCTTGG | + | 520021 | 520032 | -379 | -368 | |||
OsREG476 | AGGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG462 | GGTGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG427 | GTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG496 | TGGGCTTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG519 | GGGCTTGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGCGGCCCATAT | + | 520040 | 520051 | -360 | -349 | |||
OsREG643 | TGCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | GCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG630 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG480 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATTGGGCCAA | + | 520059 | 520069 | -341 | -331 | |||
OsREG433 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG660 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGTCAGTG | + | 520094 | 520101 | -306 | -299 | |||
OsREG510 | TGTCAGTG | PPDB Motif |   | PLACE Motif | TGAC  | ||||
REG | GTGGGACCCG | + | 520119 | 520128 | -281 | -272 | |||
OsREG650 | GTGGGACC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG648 | TGGGACCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG569 | GGGACCCG | PPDB Motif | GGGACCC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |