PlantPromoterDB promoter information of 014-071-A05
Summary of Gene (014-071-A05)
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Overview
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Focused view (chromosome 5: 521150-522349)
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Genome position
from initiation codon TSS from cDNA TSS information 014-071-A05 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 014-071-A05
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | T | clone | + | 520220 | -180 |
| TSS clone peak | G | clone | + | 520247 | -153 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGGCGTG | + | 519967 | 519974 | -433 | -426 | |||
| OsREG502 | GTGGCGTG | PPDB Motif | PLACE Motif | ||||||
| REG | AGGTGGGCTTGG | + | 520021 | 520032 | -379 | -368 | |||
| OsREG476 | AGGTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG462 | GGTGGGCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG427 | GTGGGCTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG496 | TGGGCTTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG519 | GGGCTTGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TGCGGCCCATAT | + | 520040 | 520051 | -360 | -349 | |||
| OsREG643 | TGCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG618 | GCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG490 | CGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG630 | GGCCCATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG480 | GCCCATAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AATTGGGCCAA | + | 520059 | 520069 | -341 | -331 | |||
| OsREG433 | AATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG659 | TTGGGCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG660 | TGGGCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TGTCAGTG | + | 520094 | 520101 | -306 | -299 | |||
| OsREG510 | TGTCAGTG | PPDB Motif | PLACE Motif | TGAC | |||||
| REG | GTGGGACCCG | + | 520119 | 520128 | -281 | -272 | |||
| OsREG650 | GTGGGACC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| OsREG648 | TGGGACCC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| OsREG569 | GGGACCCG | PPDB Motif | GGGACCC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||