PlantPromoterDB promoter information of 014-071-F09
Summary of Gene (014-071-F09)
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Overview
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Focused view (chromosome 3: 21938381-21939580)
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Genome position
from initiation codon TSS from cDNA TSS information 014-071-F09 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 014-071-F09
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 21940053 | -78 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGTGGGCTGC | + | 21939769 | 21939778 | -362 | -353 | |||
| OsREG461 | TGTGGGCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG591 | TGGGCTGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TCCACGCC | + | 21939908 | 21939915 | -223 | -216 | |||
| OsREG636 | TCCACGCC | PPDB Motif | PLACE Motif | ||||||
| REG | AAAAGCCC | + | 21939930 | 21939937 | -201 | -194 | |||
| OsREG419 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||