PlantPromoterDB promoter information of 015-070-C10
Summary of Gene (015-070-C10)
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Overview
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Focused view (chromosome 1: 22259766-22258567)
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Genome position
from initiation codon 006-081-F12 006-099-G06 006-114-A02 006-115-F05 006-117-A04 011-003-H03 011-025-B09 011-069-B06 011-074-D07 012-029-E03 012-050-F04 012-072-D11 013-093-E04 015-089-A01 015-095-H06 016-014-H08 016-056-E07 016-089-A01 AK061870 AK067529 AK106151 J013039D11 J013050K19 J013069F08 J013108E24 J013132D19 J023039B18 J023088C10 J023121E18 J023121M13 J033034I21 J033118N14 J033125F23 J033150M22 J043004F18 J043005J04 J043020E12 J065063C02 J065102D15 J065200P03 J065208C22 J065215B03 J075013N21 J075024P21 J075027L19 J075037F12 J075084P15 J075086M06 J075116A02 J075136P18 J075181A01 J075198O11 J080002B20 J080003E05 J080005A18 J080005E02 J080005O18 J080007B04 J080007L18 J080008C17 J080011I03 J080014B07 J080014B09 J080015A11 J080016B07 J080017H23 J080020G09 J080020I23 J080021E15 J080023O13 J080024H17 J080029P12 J080030A15 J080032I03 J080032P18 J080034E10 J080038I23 J080040B22 J080040M13 J080041E07 J080042C08 J080042H08 J080043H10 J080046J02 J080050D12 J080052C17 J080054A05 J080054J23 J080056A15 J080056F18 J080059P07 J080063J18 J080066F15 J080067G12 J080070G15 J080071B08 J080071M08 J080071N03 J080074C01 J080076F22 J080076N23 J080077F23 J080077P10 J080078A19 J080078H07 J080079G16 J080079N23 J080084L04 J080084N12 J080084N17 J080086H08 J080088M01 J080090M14 J080092F06 J080095B14 J080095C09 J080095F20 J080095H12 J080096H22 J090010O21 J090012K22 J090051I21 J090065G14 J100035M10 J100049C19 J100051K11 J100064C12 J100064F13 J100084H08 TSS from cDNA TSS information 015-070-C10 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of 015-070-C10
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 22259103 | -887 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCCTCCT | - | 22259146 | 22259153 | -930 | -937 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGAGCCGAGCCGCGTCGC | - | 22259159 | 22259177 | -943 | -961 | |||
| OsREG540 | CCGAGCCGAGCCG | PPDB Motif | PLACE Motif | ||||||
| OsREG559 | CGCGTCGC | PPDB Motif | PLACE Motif | CGACG | |||||
| REG | GGACGCGT | - | 22259309 | 22259316 | -1093 | -1100 | |||
| OsREG442 | GGACGCGT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||