PlantPromoterDB promoter information of 015-097-H12
Summary of Gene (015-097-H12)
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Overview
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Focused view (chromosome 4: 35568959-35570158)
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Genome position
from initiation codon J075032J01 TSS from cDNA TSS information 015-097-H12 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 015-097-H12
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 35576013 | -496 |
| TSS clone | C | clone | + | 35576014 | -495 |
| TSS clone peak | A | clone | + | 35576019 | -490 |
| TSS clone | G | clone | + | 35576050 | -459 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATAAAAG | + | 35575978 | 35575985 | -531 | -524 |
| Y Patch | TCTCCCCC | + | 35576002 | 35576009 | -507 | -500 |
| Y Patch | TCTCCTCC | + | 35576042 | 35576049 | -467 | -460 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCACTGACACGTGGG | + | 35575905 | 35575919 | -604 | -590 | |||
| OsREG522 | CCACTGAC | PPDB Motif | PLACE Motif | TGAC | |||||
| OsREG510 | CACTGACA | PPDB Motif | PLACE Motif | TGAC | |||||
| OsREG509 | GACACGTG | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG434 | ACACGTGG | PPDB Motif | ACGT | PLACE Motif | |||||
| OsREG508 | CACGTGGG | PPDB Motif | ACGT | PLACE Motif | |||||
| REG | AATGGGCT | + | 35575945 | 35575952 | -564 | -557 | |||
| OsREG432 | AATGGGCT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||