PlantPromoterDB promoter information of 016-031-E04
Summary of Gene (016-031-E04)
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Overview
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Focused view (chromosome 9: 17487723-17488922)
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Genome position
from initiation codon AK065937 AK066120 J013043E22 J013055H16 J013093I02 J013099D23 J013111I23 J013123B08 J013134D04 J013135P09 J033061M16 J065204F12 J090091L19 J100025J23 TSS from cDNA TSS information 016-031-E04 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of 016-031-E04
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 17488321 | -2 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTCCTCCC | + | 17488292 | 17488301 | -31 | -22 |
| Y Patch | TCCTTCCT | + | 17488316 | 17488323 | -7 | 0 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCACCTGT | + | 17488059 | 17488066 | -264 | -257 | |||
| OsREG436 | CCACCTGT | PPDB Motif | PLACE Motif | ||||||
| REG | ATCCGACGG | + | 17488076 | 17488084 | -247 | -239 | |||
| OsREG483 | ATCCGACG | PPDB Motif | CCGAC | PLACE Motif | CGACG | ||||
| OsREG546 | TCCGACGG | PPDB Motif | CCGAC | PLACE Motif | CGACG | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||