PlantPromoterDB promoter information of AK058963
Summary of Gene (AK058963)
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Overview
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Focused view (chromosome 2: 19015703-19016902)
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Genome position
from initiation codon AB049822 AB049823 J033028H23 J100025H17 J100037B11 J100039K18 J100043C03 J100044N07 J100048F06 J100064G22 J100065E13 J100070F09 J100073M20 J100075O19 TSS from cDNA TSS information AK058963 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK058963
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 19016701 | -2 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATTTGGGCTGC | + | 19016444 | 19016454 | -259 | -249 | |||
| OsREG493 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG457 | TTTGGGCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG511 | TTGGGCTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG591 | TGGGCTGC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||