PlantPromoterDB promoter information of AK059489
Summary of Gene (AK059489)
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Overview
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Focused view (chromosome 5: 24632526-24633725)
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Genome position
from initiation codon TSS from cDNA TSS information AK059489 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK059489
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 24634304 | -272 |
| TSS clone peak | G | clone | + | 24634444 | -132 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTATGGGC | + | 24634014 | 24634021 | -562 | -555 | |||
| OsREG606 | GTATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCACGTC | + | 24634083 | 24634090 | -493 | -486 | |||
| OsREG585 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | GCCCACCA | + | 24634099 | 24634106 | -477 | -470 | |||
| OsREG599 | GCCCACCA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||