Summary of Gene (AK059940)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 006-100-G12 016-019-A12 AK064189 J065071E07 J065112A15 J065117H10 J075035L05 J075076F07 J100022J22 Os12g0403750 Os12g0403775 TSS from cDNA TSS information AK059940 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | C | clone | + | 12223203 | -333 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCCTC | + | 12223198 | 12223205 | -338 | -331 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGTGGGCCTCACGTGGG | + | 12222965 | 12222982 | -571 | -554 | |||
OsREG449 | ACGTGGGC | PPDB Motif | GCCCA, ACGT  | PLACE Motif | ACGTSSSC  | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG472 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG587 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG508 | CACGTGGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
REG | GGGCCAGA | + | 12223060 | 12223067 | -476 | -469 | |||
OsREG638 | GGGCCAGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGAGGGAC | + | 12223114 | 12223121 | -422 | -415 | |||
OsREG652 | TGAGGGAC | PPDB Motif | GGGACCC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |