PlantPromoterDB promoter information of AK059940
Summary of Gene (AK059940)
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Overview
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Focused view (chromosome 12: 12222086-12223285)
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Genome position
from initiation codon 006-100-G12 016-019-A12 AK064189 J065071E07 J065112A15 J065117H10 J075035L05 J075076F07 J100022J22 Os12g0403750 Os12g0403775 TSS from cDNA TSS information AK059940 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK059940
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 12223203 | -333 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCCCTC | + | 12223198 | 12223205 | -338 | -331 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGTGGGCCTCACGTGGG | + | 12222965 | 12222982 | -571 | -554 | |||
| OsREG449 | ACGTGGGC | PPDB Motif | GCCCA, ACGT | PLACE Motif | ACGTSSSC | ||||
| OsREG571 | CGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG472 | GTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG587 | TGGGCCTC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG508 | CACGTGGG | PPDB Motif | ACGT | PLACE Motif | |||||
| REG | GGGCCAGA | + | 12223060 | 12223067 | -476 | -469 | |||
| OsREG638 | GGGCCAGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TGAGGGAC | + | 12223114 | 12223121 | -422 | -415 | |||
| OsREG652 | TGAGGGAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||