PlantPromoterDB promoter information of AK060809
Summary of Gene (AK060809)
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Overview
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Focused view (chromosome 3: 9084013-9082814)
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Genome position
from initiation codon AK066896 AK102826 J013042L05 J013091L22 J013096P13 J013118M15 J013151N20 J033061D07 J033086L04 J033099J11 J033109C10 J033116F13 J065019F13 J065089O14 J065158D07 J065160G19 J065168N10 J065208E17 J075001A15 J075010G15 J075016L23 J075019A06 J075023B13 J075032P15 J075045F05 J075053O13 J075057P06 J075061C19 J075078B10 J075086A20 J075127A16 J075128E07 J075129C06 J075130M14 J075136H13 J075149M17 J075156L08 J075160P12 J075164J01 J075173N05 J075177O03 J075188K11 J090009A02 J090019O12 J090065H05 J090067E24 J090080C03 J090090A04 J090098D13 J100060D03 J100062D05 J100074A08 TSS from cDNA TSS information AK060809 5'->3' (-) Promoter sequence Os03g0270300
TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of AK060809
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 9083187 | -174 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||