PlantPromoterDB promoter information of AK061722

Summary of Gene (AK061722)

Organism	Oryza sativa
Chromosome	2
Locus	Os02g0533900 NCBI
Gene model	AK061722
Description	NONE

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Overview

Focused view (chromosome 2: 20507146-20508345)

`Genome position from initiation codon` 006-022-D07 012-014-E01 AB062681 AK106147 AK121892 J013045C19 J013170C10 J033058C15 J033105C15 J033120B19 J065029J08 J065098B15 J065098J23 J100036F05 J100077E11 J100087A08 TSS from cDNA TSS information AK061722 5'->3' (+) Promoter sequence 009-149-F12 014-017-G07 014-028-F04 014-050-G04 014-095-F04 014-099-C08 016-046-F05 AK121139 J013104A14 J023077F13 J023145I11 J065033D14 J065079I15 J065104E21 J065128E06 J065174F07 J065195B12 J065207B12 J080304M24 J090040A13 J090054B18 J100037A06 J100042F24 J100043N23 J100044H14 J100056K24 J100063O22 J100071G05 J100078G15 TSS from cDNA TSS information 3'->5' (-) Promoter sequence	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AK061722

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak G clone + 20507823 -73

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`G`	clone	+	20507823	-73

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TCTGGGCCTA + 20507544 20507553 -352 -343

OsREG629 TCTGGGCC   PPDB Motif GCCCA PLACE Motif

OsREG473 CTGGGCCT PPDB Motif GCCCA PLACE Motif

OsREG656   TGGGCCTA PPDB Motif GCCCA PLACE Motif

REG GTTTGGGCCTC + 20507564 20507574 -332 -322

OsREG593 GTTTGGGC    PPDB Motif GCCCA PLACE Motif

OsREG625 TTTGGGCC   PPDB Motif GCCCA PLACE Motif

OsREG471   TTGGGCCT PPDB Motif GCCCA PLACE Motif

OsREG587    TGGGCCTC PPDB Motif GCCCA PLACE Motif

REG CCCGGCCCGGCC + 20507581 20507592 -315 -304

OsREG538 CCCGGCCC     PPDB Motif GCCCA PLACE Motif

OsREG544   CGGCCCGG   PPDB Motif PLACE Motif

OsREG616    GGCCCGGC PPDB Motif PLACE Motif

OsREG614     GCCCGGCC PPDB Motif PLACE Motif

REG CCACCAAC + 20507644 20507651 -252 -245

OsREG520 CCACCAAC PPDB Motif CCAACGG PLACE Motif

REG CGGATCGGACGG + 20507659 20507670 -237 -226

OsREG541 CGGATCGG     PPDB Motif PLACE Motif

OsREG589   GATCGGAC   PPDB Motif PLACE Motif

OsREG484    ATCGGACG PPDB Motif PLACE Motif

OsREG545     TCGGACGG PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TCTGGGCCTA`		+	20507544	20507553	-352	-343
	OsREG629	`TCTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG473	`CTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG656	`TGGGCCTA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GTTTGGGCCTC`		+	20507564	20507574	-332	-322
	OsREG593	`GTTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG625	`TTTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG471	`TTGGGCCT`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG587	`TGGGCCTC`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`CCCGGCCCGGCC`		+	20507581	20507592	-315	-304
	OsREG538	`CCCGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif
	OsREG544	`CGGCCCGG`		PPDB Motif		PLACE Motif
	OsREG616	`GGCCCGGC`		PPDB Motif		PLACE Motif
	OsREG614	`GCCCGGCC`		PPDB Motif		PLACE Motif
REG	`CCACCAAC`		+	20507644	20507651	-252	-245
	OsREG520	`CCACCAAC`		PPDB Motif	`CCAACGG`	PLACE Motif
REG	`CGGATCGGACGG`		+	20507659	20507670	-237	-226
	OsREG541	`CGGATCGG`		PPDB Motif		PLACE Motif
	OsREG589	`GATCGGAC`		PPDB Motif		PLACE Motif
	OsREG484	`ATCGGACG`		PPDB Motif		PLACE Motif
	OsREG545	`TCGGACGG`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak A clone - 20507340 AK121139, J100063O22, AK121139, J023077F13, 014-050-G04, 013-058-H02, 009-149-F12, 016-046-F05, J013104A14, J080304M24, 014-099-C08, 014-028-F04, J100056K24, J065079I15, J065128E06, 014-095-F04, J100043N23, J023145I11, J065195B12, J100042F24, J100078G15, J100044H14, J100071G05, J065104E21, J065033D14, J065174F07, J065207B12, J100037A06, J090040A13, 014-017-G07, J090054B18

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`A`	clone	-	20507340	AK121139, J100063O22, AK121139, J023077F13, 014-050-G04, 013-058-H02, 009-149-F12, 016-046-F05, J013104A14, J080304M24, 014-099-C08, 014-028-F04, J100056K24, J065079I15, J065128E06, 014-095-F04, J100043N23, J023145I11, J065195B12, J100042F24, J100078G15, J100044H14, J100071G05, J065104E21, J065033D14, J065174F07, J065207B12, J100037A06, J090040A13, 014-017-G07, J090054B18

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CACTGACA - 20507397 20507404 009-149-F12, 013-058-H02, 014-017-G07, 014-028-F04, 014-050-G04, 014-095-F04, 014-099-C08, 016-046-F05, AK121139, J013104A14, J023077F13, J023145I11, J065033D14, J065079I15, J065104E21, J065128E06, J065174F07, J065195B12, J065207B12, J080304M24, J090040A13, J090054B18, J100037A06, J100042F24, J100043N23, J100044H14, J100056K24, J100063O22, J100071G05, J100078G15

OsREG510 CACTGACA PPDB Motif PLACE Motif TGAC

REG ATCCGACGG - 20507406 20507414 009-149-F12, 013-058-H02, 014-017-G07, 014-028-F04, 014-050-G04, 014-095-F04, 014-099-C08, 016-046-F05, AK121139, J013104A14, J023077F13, J023145I11, J065033D14, J065079I15, J065104E21, J065128E06, J065174F07, J065195B12, J065207B12, J080304M24, J090040A13, J090054B18, J100037A06, J100042F24, J100043N23, J100044H14, J100056K24, J100063O22, J100071G05, J100078G15

OsREG483 ATCCGACG PPDB Motif CCGAC PLACE Motif CGACG

OsREG546 TCCGACGG PPDB Motif CCGAC PLACE Motif CGACG

REG TAGGCCCAGA - 20507544 20507553 009-149-F12, 013-058-H02, 014-017-G07, 014-028-F04, 014-050-G04, 014-095-F04, 014-099-C08, 016-046-F05, AK121139, J013104A14, J023077F13, J023145I11, J065033D14, J065079I15, J065104E21, J065128E06, J065174F07, J065195B12, J065207B12, J080304M24, J090040A13, J090054B18, J100037A06, J100042F24, J100043N23, J100044H14, J100056K24, J100063O22, J100071G05, J100078G15

OsREG656 TAGGCCCA   PPDB Motif GCCCA PLACE Motif

OsREG473 AGGCCCAG PPDB Motif GCCCA PLACE Motif

OsREG629   GGCCCAGA PPDB Motif GCCCA PLACE Motif

REG GAGGCCCAAAC - 20507564 20507574 009-149-F12, 013-058-H02, 014-017-G07, 014-028-F04, 014-050-G04, 014-095-F04, 014-099-C08, 016-046-F05, AK121139, J013104A14, J023077F13, J023145I11, J065033D14, J065079I15, J065104E21, J065128E06, J065174F07, J065195B12, J065207B12, J080304M24, J090040A13, J090054B18, J100037A06, J100042F24, J100043N23, J100044H14, J100056K24, J100063O22, J100071G05, J100078G15

OsREG587 GAGGCCCA    PPDB Motif GCCCA PLACE Motif

OsREG471 AGGCCCAA   PPDB Motif GCCCA PLACE Motif

OsREG625   GGCCCAAA PPDB Motif GCCCA PLACE Motif

OsREG593    GCCCAAAC PPDB Motif GCCCA PLACE Motif

REG GGCCGGGCCGGG - 20507581 20507592 009-149-F12, 013-058-H02, 014-017-G07, 014-028-F04, 014-050-G04, 014-095-F04, 014-099-C08, 016-046-F05, AK121139, J013104A14, J023077F13, J023145I11, J065033D14, J065079I15, J065104E21, J065128E06, J065174F07, J065195B12, J065207B12, J080304M24, J090040A13, J090054B18, J100037A06, J100042F24, J100043N23, J100044H14, J100056K24, J100063O22, J100071G05, J100078G15

OsREG614 GGCCGGGC     PPDB Motif PLACE Motif

OsREG616 GCCGGGCC    PPDB Motif PLACE Motif

OsREG544   CCGGGCCG   PPDB Motif PLACE Motif

OsREG538     GGGCCGGG PPDB Motif GCCCA PLACE Motif