Summary of Gene (AK061722)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 012-014-E01 AB062681 AK106147 AK121892 J013045C19 J013170C10 J033058C15 J033105C15 J033120B19 J065029J08 J065098B15 J065098J23 J100036F05 J100077E11 J100087A08 TSS from cDNA TSS information AK061722 5'->3' (+) Promoter sequence 009-149-F12
014-017-G07 014-028-F04 014-050-G04 014-095-F04 014-099-C08 016-046-F05 AK121139 J013104A14 J023077F13 J023145I11 J065033D14 J065079I15 J065104E21 J065128E06 J065174F07 J065195B12 J065207B12 J080304M24 J090040A13 J090054B18 J100037A06 J100042F24 J100043N23 J100044H14 J100056K24 J100063O22 J100071G05 J100078G15 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 20507823 | -73 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCTGGGCCTA | + | 20507544 | 20507553 | -352 | -343 | |||
OsREG629 | TCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG473 | CTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG656 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTTTGGGCCTC | + | 20507564 | 20507574 | -332 | -322 | |||
OsREG593 | GTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG587 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCGGCCCGGCC | + | 20507581 | 20507592 | -315 | -304 | |||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG544 | CGGCCCGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG616 | GGCCCGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG614 | GCCCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCACCAAC | + | 20507644 | 20507651 | -252 | -245 | |||
OsREG520 | CCACCAAC | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | CGGATCGGACGG | + | 20507659 | 20507670 | -237 | -226 | |||
OsREG541 | CGGATCGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG589 | GATCGGAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG484 | ATCGGACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG545 | TCGGACGG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | - | 20507340 | AK121139, J100063O22, AK121139, J023077F13, 014-050-G04, 013-058-H02, 009-149-F12, 016-046-F05, J013104A14, J080304M24, 014-099-C08, 014-028-F04, J100056K24, J065079I15, J065128E06, 014-095-F04, J100043N23, J023145I11, J065195B12, J100042F24, J100078G15, J100044H14, J100071G05, J065104E21, J065033D14, J065174F07, J065207B12, J100037A06, J090040A13, 014-017-G07, J090054B18 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |