PlantPromoterDB promoter information of AK061722
Summary of Gene (AK061722)
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Overview
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Focused view (chromosome 2: 20510396-20511595)
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Genome position
from initiation codon 012-014-E01 AB062681 AK106147 AK121892 J013045C19 J013170C10 J033058C15 J033105C15 J033120B19 J065029J08 J065098B15 J065098J23 J075110E03 J100036F05 J100077E11 J100087A08 TSS from cDNA TSS information AK061722 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK061722
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 20507823 | -73 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCTGGGCCTA | + | 20507544 | 20507553 | -352 | -343 | |||
| OsREG629 | TCTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG473 | CTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG656 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GTTTGGGCCTC | + | 20507564 | 20507574 | -332 | -322 | |||
| OsREG593 | GTTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | TTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG471 | TTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG587 | TGGGCCTC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCCGGCCCGGCC | + | 20507581 | 20507592 | -315 | -304 | |||
| OsREG538 | CCCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG544 | CGGCCCGG | PPDB Motif | PLACE Motif | ||||||
| OsREG616 | GGCCCGGC | PPDB Motif | PLACE Motif | ||||||
| OsREG614 | GCCCGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | CCACCAAC | + | 20507644 | 20507651 | -252 | -245 | |||
| OsREG520 | CCACCAAC | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | CGGATCGGACGG | + | 20507659 | 20507670 | -237 | -226 | |||
| OsREG541 | CGGATCGG | PPDB Motif | PLACE Motif | ||||||
| OsREG589 | GATCGGAC | PPDB Motif | PLACE Motif | ||||||
| OsREG484 | ATCGGACG | PPDB Motif | PLACE Motif | ||||||
| OsREG545 | TCGGACGG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||