PlantPromoterDB promoter information of AK062981
Summary of Gene (AK062981)
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Overview
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Focused view (chromosome 3: 28122287-28123486)
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Genome position
from initiation codon TSS from cDNA TSS information AK062981 5'->3' (+) Promoter sequence AK058278
TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK062981
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 28125350 | -37 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTGGCCCATCA | + | 28125220 | 28125230 | -167 | -157 | |||
| OsREG577 | CTGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG488 | TGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG590 | GGCCCATC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG607 | GCCCATCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TATTGGGCCGGT | + | 28125246 | 28125257 | -141 | -130 | |||
| OsREG596 | TATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG542 | TGGGCCGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG440 | GGGCCGGT | PPDB Motif | GCCCA, AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||