PlantPromoterDB promoter information of AK064747
Summary of Gene (AK064747)
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Overview
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Focused view (chromosome 3: 4768600-4769799)
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Genome position
from initiation codon TSS from cDNA TSS information AK064747 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK064747
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 4767961 | -139 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATTTGGGCCGGGC | + | 4767707 | 4767719 | -393 | -381 | |||
| OsREG493 | ATTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | TTTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG563 | TTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG542 | TGGGCCGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG538 | GGGCCGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG614 | GGCCGGGC | PPDB Motif | PLACE Motif | ||||||
| REG | TATGGGCCTT | + | 4767734 | 4767743 | -366 | -357 | |||
| OsREG630 | TATGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG474 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG430 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||