PlantPromoterDB promoter information of AK067073
Summary of Gene (AK067073)
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Overview
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Focused view (chromosome 7: 4081972-4083171)
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Genome position
from initiation codon TSS from cDNA TSS information AK067073 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK067073
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 4081936 | -736 |
| TSS clone peak | A | clone | + | 4081947 | -725 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTCTCTCTCTCTCT | + | 4081887 | 4081905 | -785 | -767 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCAGCCCAATT | + | 4081800 | 4081810 | -872 | -862 | |||
| OsREG657 | TCAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG511 | CAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG460 | AGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG433 | GCCCAATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCCACCAC | + | 4081877 | 4081884 | -795 | -788 | |||
| OsREG527 | CCCACCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||